Gene details

Annotation of co-expression genes

PH01006214G0030's details annotation

1.Annotation

ICBR annotation: 50S ribosomal protein L20, putative, expressed

Blast result AT1G16740 : 7.40E-55
Blast annotation: Ribosomal protein L20

2.Location

Scaffold: PH01006214
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000433	Ribosome_biogenesis_in_eukaryotes ATP-dependent helicase activity, threonine-tRNA ligase activity, helicase activity,
coexpression network	CFinderM001029	translation, structural constituent of ribosome, intracellular, Ribosome large ribosomal subunit, thiolester_hydrolase_activity rRNA binding, RNA_polymerase Fatty_acid_biosynthesis DNA-directed RNA polymerase activity, fatty acid biosynthetic process, transcription, DNA-dependent,
coexpression network	CFinderM001030	protein import into mitochondrial inner membrane, RLK-Pelle_L-LEC (from iTAK) protein methylation,
coexpression network	CFinderM001031	intracellular, translation, structural constituent of ribosome, protein import into mitochondrial inner membrane, Ribosome RLK-Pelle_L-LEC (from iTAK) large ribosomal subunit, ribosome biogenesis,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

Pfam Accession	Pfam Annotation	Alignment Start	Alignment Start
PF00453.17	Ribosomal_L20	3	98

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
Ribosome	large subunit ribosomal protein L20	ko03011	K02887

10.Gene Ontology

GO Accession	GO Annotation
GO:0003735	structural constituent of ribosome
GO:0005622	intracellular
GO:0005840	ribosome
GO:0006412	translation
GO:0019843	rRNA binding

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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