PH01006328G0050's details annotation
1.Annotation
ICBR annotation: endonuclease, putative, expressed
Blast result AT5G41150 : 0.00E+00
Blast annotation: Restriction endonuclease, type II-like superfamily protein
2.Location
Scaffold: PH01006328
Strand: -
| Region | Start | End |
| gene | 29003 | 34317 |
| mRNA | 29003 | 34317 |
| exon | 29003 | 29918 |
| exon | 30010 | 30233 |
| exon | 30366 | 30626 |
| exon | 30718 | 30828 |
| exon | 31100 | 31906 |
| exon | 32084 | 32248 |
| exon | 32577 | 32689 |
| exon | 32775 | 33004 |
| exon | 33205 | 34317 |
| CDS | 29708 | 29918 |
| CDS | 30010 | 30233 |
| CDS | 30366 | 30626 |
| CDS | 30718 | 30828 |
| CDS | 31100 | 31906 |
| CDS | 32084 | 32248 |
| CDS | 32577 | 32689 |
| CDS | 32775 | 33004 |
| CDS | 33205 | 34073 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001503 | methyltransferase activity, DNA metabolic process, nuclease activity, MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) cell redox homeostasis, Nucleotide_excision_repair |
| coexpression network | CFinderM001504 | Amino_sugar_and_nucleotide_sugar_metabolism GT8 GlycosylTransferases DNA metabolic process, cellular metabolic process, Nucleotide_excision_repair Starch_and_sucrose_metabolism |
| coexpression network | CFinderM001604 | GT31 GlycosylTransferases Nucleotide_excision_repair guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding DNA metabolic process, G-protein coupled receptor signaling pathway, nuclease activity, endoplasmic reticulum, |
| coexpression network | CFinderM001768 | regulation of Rab GTPase activity, Rab GTPase activator activity, intracellular, Nucleotide_excision_repair G-protein coupled receptor signaling pathway, DNA metabolic process, guanyl nucleotide binding, G-protein_beta/gamma-subunit_complex_binding nuclease activity, |
| coexpression network | CFinderM001774 | regulation of Rab GTPase activity, Rab GTPase activator activity, intracellular, DNA metabolic process, isoprenoid biosynthetic process, nuclease activity, Nucleotide_excision_repair Terpenoid_backbone_biosynthesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02732.14 | ERCC4 | 768 | 895 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Nucleotide excision repair | DNA excision repair protein ERCC-4 [EC:3.1.-.-] | ko03420 | K10848 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0004518 | nuclease activity |
| GO:0006259 | DNA metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.