PH01007388G0050's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT5G05080 : 2.10E-89
Blast annotation: ubiquitin-conjugating enzyme 22
2.Location
Scaffold: PH01007388
Strand: +
| Region | Start | End |
| gene | 15977 | 20518 |
| mRNA | 15977 | 20518 |
| exon | 15977 | 18688 |
| exon | 18992 | 19069 |
| exon | 19160 | 19272 |
| exon | 19455 | 19558 |
| exon | 19830 | 20518 |
| CDS | 18526 | 18688 |
| CDS | 18992 | 19069 |
| CDS | 19160 | 19272 |
| CDS | 19455 | 19558 |
| CDS | 19830 | 20133 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 15 | 150 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ubiquitin mediated proteolysis | ubiquitin-conjugating enzyme E2 S [EC:6.3.2.19] | ko04120 | K10583 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.