PH01007662G0010's details annotation
1.Annotation
ICBR annotation: ribonuclease 2-5A family protein, expressed
Blast result AT2G17520 : 7.00E-105
Blast annotation: Endoribonuclease/protein kinase IRE1-like
2.Location
Scaffold: PH01007662
Strand: -
| Region | Start | End |
| gene | 794 | 7712 |
| mRNA | 794 | 7712 |
| exon | 794 | 1107 |
| exon | 1552 | 1636 |
| exon | 2392 | 2638 |
| exon | 2792 | 2964 |
| exon | 4101 | 5476 |
| exon | 5557 | 5746 |
| exon | 6074 | 7712 |
| CDS | 961 | 1107 |
| CDS | 1552 | 1636 |
| CDS | 2392 | 2638 |
| CDS | 2792 | 2964 |
| CDS | 4101 | 5476 |
| CDS | 5557 | 5746 |
| CDS | 6074 | 6150 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 435 | 688 |
| PF06479.11 | Ribonuc_2-5A | 717 | 759 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004540 | ribonuclease activity |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006397 | mRNA processing |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.