PH01008425G0010's details annotation
1.Annotation
ICBR annotation: oxidoreductase, aldo/keto reductase family protein, putative, expressed
Blast result AT2G37770 : 1.00E-112
Blast annotation: NAD(P)-linked oxidoreductase superfamily protein
2.Location
Scaffold: PH01008425
Strand: -
| Region | Start | End |
| gene | 1219 | 6137 |
| mRNA | 1219 | 6137 |
| exon | 1219 | 1390 |
| exon | 1750 | 1860 |
| exon | 1997 | 2269 |
| exon | 2941 | 3028 |
| exon | 3135 | 3211 |
| exon | 5134 | 5198 |
| exon | 5945 | 6137 |
| CDS | 1307 | 1390 |
| CDS | 1750 | 1860 |
| CDS | 1997 | 2269 |
| CDS | 2941 | 3028 |
| CDS | 3135 | 3211 |
| CDS | 5134 | 5198 |
| CDS | 5945 | 6035 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000169 | peroxisomal membrane, protein_import_into_peroxisome_matrix negative_regulation_of_transcription,_DNA-templated transcription_corepressor_activity Galactose_metabolism Peroxisome Pentose_and_glucuronate_interconversions Pyruvate_metabolism Glycerolipid_metabolism Fructose_and_mannose_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00248.20 | Aldo_ket_red | 16 | 282 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Pentose and glucuronate interconversions | aldehyde reductase [EC:1.1.1.21] | ko00040 | K00011 |
| Fructose and mannose metabolism | aldehyde reductase [EC:1.1.1.21] | ko00051 | K00011 |
| Galactose metabolism | aldehyde reductase [EC:1.1.1.21] | ko00052 | K00011 |
| Pyruvate metabolism | aldehyde reductase [EC:1.1.1.21] | ko00620 | K00011 |
| Glycerolipid metabolism | aldehyde reductase [EC:1.1.1.21] | ko00561 | K00011 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.