Annotation of co-expression genes

PH01013201G0010's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT4G02460 : 1.40E-59
Blast annotation: DNA mismatch repair protein, putative

2.Location

Scaffold: PH01013201
Strand: +

RegionStartEnd
gene1563989
mRNA1563989
exon156302
exon523846
exon37263794
exon39163989
CDS156302
CDS523846
CDS37263794
CDS39163989

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000407MutLalpha_complex
Mismatch_repair
Mismatch_repair
mismatched DNA binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08676.10MutL_C155204

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Mismatch repairDNA mismatch repair protein PMS2ko03430K10858

10.Gene Ontology

GO AccessionGO Annotation
GO:0005524ATP binding
GO:0006298mismatch repair
GO:0030983mismatched DNA binding
GO:0032389MutLalpha complex

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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