PH01048430G0010's details annotation
1.Annotation
ICBR annotation: zinc finger matrin-type protein 5, putative, expressed
Blast result AT5G26749 : 2.30E-18
Blast annotation: C2H2 and C2HC zinc fingers superfamily protein
2.Location
Scaffold: PH01048430
Strand: -
| Region | Start | End |
| gene | 151 | 1624 |
| mRNA | 151 | 1624 |
| exon | 151 | 403 |
| exon | 1013 | 1099 |
| exon | 1489 | 1624 |
| CDS | 288 | 403 |
| CDS | 1013 | 1099 |
| CDS | 1489 | 1624 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF06220.11 | zf-U1 | 5 | 36 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.