CRO_T000094's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T000094 | heavy metal atpase |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G63440 | 0 | HMA5|heavy metal atpase 5 |
| Arabidopsis thaliana | AT1G10130 | 4.00E-16 | ATECA3|ER-TYPE CA2+-ATPASE 3;ECA3|endoplasmic reticulum-type calcium-transporting ATPase 3 |
| Arabidopsis thaliana | AT1G07670 | 3.00E-04 | ECA4|endomembrane-type CA-ATPase 4 |
| Arabidopsis thaliana | AT1G07810 | 3.00E-04 | ATECA1|ER-TYPE CA2+-ATPASE 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000431 | detoxification of copper ion copper ion export Protein_kinases_phosphatases, PPC:1.1.1: Leucine-rich transmembrane protein kinase/Strubbelig Receptor Family 1 copper-exporting ATPase activity Transcription_related, Transcription factor: Orphans phosphorelay signal transduction system protein transport MAPK signaling pathway - plant Plant hormone signal transduction copper ion binding integral component of plasma membrane intracellular membrane-bounded organelle intracellular protein kinase activity protein phosphorylation nucleotide binding | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T000094 | scaffolds.min_1000bp | scaffold_2967981 | 11885 | 16956 | - |
Gene detail image
| Genome: |
| CRO_T000094 |
| CDS: |
| CRO_T000094 |
| Transcript: |
| CRO_T000094 |
| Protein: |
| CRO_T000094 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0004008 | copper-exporting ATPase activity | molecular_function |
| GO:0005507 | copper ion binding | molecular_function |
| GO:0005887 | integral component of plasma membrane | cellular_component |
| GO:0010273 | detoxification of copper ion | biological_process |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0060003 | copper ion export | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K17686 | copA | EC:3.6.3.54 | MAPK signaling pathway - plant | ko04016 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00403.23 | HMA | 58 | 117 | 1e-14 |
| PF00403.23 | HMA | 136 | 196 | 1.4e-12 |
| PF00403.23 | HMA | 211 | 269 | 1.3e-06 |
| PF00122.17 | E1-E2_ATPase | 409 | 648 | 1.2e-63 |
| PF00702.23 | Hydrolase | 653 | 876 | 9e-50 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 6.585515 | |
| SRR122236 | mixed tissue RA CK | 6.394745 | |
| SRR122237 | mixed tissue RB CK | 5.953465 | |
| SRR122250 | callus YE 0.3mg/ml CK | 1.83339 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 2.95826 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 3.83181 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 2.22667 | |
| SRR122242 | callus MeJA 100um 0h | 1.77191 | |
| SRR122246 | callus MeJA 100um 6h | 3.17407 | |
| SRR122240 | callus MeJA 100um 12h | 2.32302 | |
| SRR122241 | callus MeJA 100um 24h | 0.973259 | |
| SRR122239 | flower CK 1 | 2.79968 | |
| SRR1271859 | flower CK 2 | 5.944175 | |
| SRR1144633 | healthy flowers CK | 7.213775 | |
| SRR1144634 | flowers PnWB infected | 8.087145 | |
| SRR122257 | hairy root CK | 6.76094 | |
| SRR122258 | hairy root MeJA 250um CK | 6.81512 | |
| SRR122259 | hairy root MeJA 250um 24h | 2.02647 | |
| SRR122256 | hairy root RebH F CK | 3.72422 | |
| SRR122255 | hairy root TDCi CK | 14.1161 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 11.0641 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 7.88587 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 1.67406 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 1.3782 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 2.90633 | |
| SRR1820238 | Hairy roots CK GUS 3 | 1.71106 | |
| SRR1820233 | Hairy roots CK GUS 4 | 1.83244 | |
| SRR1820326 | Hairy roots CK GUS 5 | 4.87364 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 20.6251 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 3.01157 | |
| SRR122252 | immature leaf CK | 5.62947 | |
| SRR342023 | leaf CK 1 | 8.181485 | |
| SRR342022 | leaf CK 2 | 8.50792 | |
| SRR342019 | leaf CK 3 | 10.52905 | |
| SRR342017 | leaf CK 4 | 10.35055 | |
| SRR1271857 | leaf CK 5 | 2.848135 | |
| SRR122251 | mature leaf CK | 4.82691 | |
| SRR648705 | root CK 1 | 4.029705 | |
| SRR1271858 | root CK 2 | 4.884485 | |
| SRR122254 | root CK 3 | 6.54269 | |
| SRR648707 | root MeJA 24h | 3.86342 | |
| SRR648709 | root MeJA 24h DSN normalized | 4.12947 | |
| SRR837772 | seedling CK | 4.85049 | |
| SRR122243 | sterile seedlings AE CK 1 | 4.64145 | |
| SRR122245 | sterile seedlings AE CK 2 | 6.27429 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 4.5387 | |
| SRR122253 | stem CK | 11.0866 | |
| SRR646572 | shoots CK | 2.014045 | |
| SRR647068 | shoots MeJA 6h 1 | 1.42152 | |
| SRR646596 | shoots MeJA 6h 2 | 1.713385 | |
| SRR646604 | shoots MeJA 24h | 0.8165905 | |
| SRR924147 | suspension cells EX ORCA2 CK | 8.46154 | |
| SRR924148 | suspension cells EX ORCA3 CK | 5.98167 |