CRO_T005613's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T005613 | Leucine-rich receptor-like protein kinase family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G25790 | 0 | SKM1|STERILITY-REGULATING KINASE MEMBER 1 |
| Arabidopsis thaliana | AT3G49670 | 3.00E-129 | BAM2|BARELY ANY MERISTEM 2 |
| Arabidopsis thaliana | AT5G65700 | 2.00E-122 | BAM1|BARELY ANY MERISTEM 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001779 | jasmonic acid metabolic process induced systemic resistance, jasmonic acid mediated signaling pathway jasmonate-amino synthetase activity transcription, RNA-templated response to wounding RNA-directed RNA polymerase activity Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII Plant hormone signal transduction phosphorylation kinase activity Ubiquitin_Proteasome_system, E3: RING oxidoreductase activity nucleic acid binding nucleotide binding | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T005613 | scaffolds.min_1000bp | scaffold_2972623 | 34820 | 39485 | + |
Gene detail image
| Genome: |
| CRO_T005613 |
| CDS: |
| CRO_T005613 |
| Transcript: |
| CRO_T005613 |
| Protein: |
| CRO_T005613 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016301 | kinase activity | molecular_function |
| GO:0016310 | phosphorylation | biological_process |
| GO:0016491 | oxidoreductase activity | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.12.4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.9 | LRRNT_2 | 35 | 70 | 1.6e-08 |
| PF13855.3 | LRR_8 | 79 | 137 | 30.1 |
| PF13855.3 | LRR_8 | 246 | 302 | 28.7 |
| PF00560.30 | LRR_1 | 366 | 386 | 9.7 |
| PF13855.3 | LRR_8 | 486 | 545 | 30.9 |
| PF07714.14 | Pkinase_Tyr | 749 | 969 | 5.2e-17 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 5.594195 | |
| SRR122236 | mixed tissue RA CK | 8.3586 | |
| SRR122237 | mixed tissue RB CK | 9.54856 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0.278561 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 0.130905 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 0.165298 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 0.179846 | |
| SRR122242 | callus MeJA 100um 0h | 0.0282697 | |
| SRR122246 | callus MeJA 100um 6h | 0.0850758 | |
| SRR122240 | callus MeJA 100um 12h | 0.254142 | |
| SRR122241 | callus MeJA 100um 24h | 0.177863 | |
| SRR122239 | flower CK 1 | 7.95533 | |
| SRR1271859 | flower CK 2 | 7.432455 | |
| SRR1144633 | healthy flowers CK | 8.048855 | |
| SRR1144634 | flowers PnWB infected | 18.18495 | |
| SRR122257 | hairy root CK | 12.991 | |
| SRR122258 | hairy root MeJA 250um CK | 11.6802 | |
| SRR122259 | hairy root MeJA 250um 24h | 8.96872 | |
| SRR122256 | hairy root RebH F CK | 9.06153 | |
| SRR122255 | hairy root TDCi CK | 12.9916 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 8.03303 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 10.5133 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 12.2962 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 13.8685 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 12.3978 | |
| SRR1820238 | Hairy roots CK GUS 3 | 12.7679 | |
| SRR1820233 | Hairy roots CK GUS 4 | 9.20919 | |
| SRR1820326 | Hairy roots CK GUS 5 | 17.2922 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 7.53753 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 7.16185 | |
| SRR122252 | immature leaf CK | 13.9114 | |
| SRR342023 | leaf CK 1 | 22.5768 | |
| SRR342022 | leaf CK 2 | 20.89475 | |
| SRR342019 | leaf CK 3 | 23.78375 | |
| SRR342017 | leaf CK 4 | 17.2606 | |
| SRR1271857 | leaf CK 5 | 4.04282 | |
| SRR122251 | mature leaf CK | 9.91946 | |
| SRR648705 | root CK 1 | 0.03151095 | |
| SRR1271858 | root CK 2 | 3.142215 | |
| SRR122254 | root CK 3 | 22.1073 | |
| SRR648707 | root MeJA 24h | 0.0623151 | |
| SRR648709 | root MeJA 24h DSN normalized | 0.03145585 | |
| SRR837772 | seedling CK | 6.22276 | |
| SRR122243 | sterile seedlings AE CK 1 | 13.5562 | |
| SRR122245 | sterile seedlings AE CK 2 | 10.2308 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 14.3286 | |
| SRR122253 | stem CK | 24.3142 | |
| SRR646572 | shoots CK | 7.704305 | |
| SRR647068 | shoots MeJA 6h 1 | 9.768045 | |
| SRR646596 | shoots MeJA 6h 2 | 8.81693 | |
| SRR646604 | shoots MeJA 24h | 11.401 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0.8255465 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0.1097365 |