CRO_T006077's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T006077 | C2H2-like zinc finger protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G44160 | 2.00E-80 | IDD8|INDETERMINATE DOMAIN 8;NUC|nutcracker |
| Arabidopsis thaliana | AT4G02670 | 5.00E-80 | AtIDD12|indeterminate(ID)-domain 12 |
| Arabidopsis thaliana | AT1G03840 | 4.00E-79 | MGP|Magpie |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T016500 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM001459 | pentose phosphate pathway (oxidative branch) I Ubiquitin_Proteasome_system, E3 adaptor: DWD glucose metabolic process pentose-phosphate shunt glucose-6-phosphate dehydrogenase activity Transcription_related, Transcription factor: C2H2 Transcription_related, Transcription factor: ERF | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T006077 | scaffolds.min_1000bp | scaffold_2981174 | 20507 | 23730 | + |
Gene detail image
| Genome: |
| CRO_T006077 |
| CDS: |
| CRO_T006077 |
| Transcript: |
| CRO_T006077 |
| Protein: |
| CRO_T006077 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF12171.5 | zf-C2H2_jaz | 67 | 89 | 8.3e-05 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 43.7141 | |
| SRR122236 | mixed tissue RA CK | 32.3879 | |
| SRR122237 | mixed tissue RB CK | 30.42165 | |
| SRR122250 | callus YE 0.3mg/ml CK | 34.2628 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 29.1012 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 31.2632 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 34.4955 | |
| SRR122242 | callus MeJA 100um 0h | 36.2265 | |
| SRR122246 | callus MeJA 100um 6h | 16.589 | |
| SRR122240 | callus MeJA 100um 12h | 17.9929 | |
| SRR122241 | callus MeJA 100um 24h | 45.8595 | |
| SRR122239 | flower CK 1 | 50.7527 | |
| SRR1271859 | flower CK 2 | 32.7735 | |
| SRR1144633 | healthy flowers CK | 64.36175 | |
| SRR1144634 | flowers PnWB infected | 50.96485 | |
| SRR122257 | hairy root CK | 71.3559 | |
| SRR122258 | hairy root MeJA 250um CK | 59.571 | |
| SRR122259 | hairy root MeJA 250um 24h | 54.3108 | |
| SRR122256 | hairy root RebH F CK | 107.046 | |
| SRR122255 | hairy root TDCi CK | 68.5507 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 58.6343 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 50.2146 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 61.7132 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 55.6667 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 63.4482 | |
| SRR1820238 | Hairy roots CK GUS 3 | 66.1062 | |
| SRR1820233 | Hairy roots CK GUS 4 | 66.1406 | |
| SRR1820326 | Hairy roots CK GUS 5 | 71.46415 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 187.188 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 50.2202 | |
| SRR122252 | immature leaf CK | 39.129 | |
| SRR342023 | leaf CK 1 | 23.39175 | |
| SRR342022 | leaf CK 2 | 19.04 | |
| SRR342019 | leaf CK 3 | 22.8943 | |
| SRR342017 | leaf CK 4 | 25.8523 | |
| SRR1271857 | leaf CK 5 | 20.9485 | |
| SRR122251 | mature leaf CK | 30.1729 | |
| SRR648705 | root CK 1 | 23.54615 | |
| SRR1271858 | root CK 2 | 23.6931 | |
| SRR122254 | root CK 3 | 85.586 | |
| SRR648707 | root MeJA 24h | 25.73885 | |
| SRR648709 | root MeJA 24h DSN normalized | 25.6684 | |
| SRR837772 | seedling CK | 47.38915 | |
| SRR122243 | sterile seedlings AE CK 1 | 40.6376 | |
| SRR122245 | sterile seedlings AE CK 2 | 27.745 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 38.8155 | |
| SRR122253 | stem CK | 107.546 | |
| SRR646572 | shoots CK | 35.40455 | |
| SRR647068 | shoots MeJA 6h 1 | 31.6759 | |
| SRR646596 | shoots MeJA 6h 2 | 27.0771 | |
| SRR646604 | shoots MeJA 24h | 34.8151 | |
| SRR924147 | suspension cells EX ORCA2 CK | 31.2342 | |
| SRR924148 | suspension cells EX ORCA3 CK | 20.30075 |