CRO_T006323's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T006323 | CW-type Zinc Finger domain containing protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G62900 | 1.00E-61 | CW-type Zinc Finger |
| Arabidopsis thaliana | AT1G02990 | 2.00E-20 | |
| Arabidopsis thaliana | AT4G15730 | 4.00E-10 | CW-type Zinc Finger |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000546 | Peroxisome transmembrane receptor protein tyrosine kinase activity cellular protein metabolic process regulation of gene expression peptidyl-tyrosine phosphorylation Protein_kinases_phosphatases, PPC:1.12.2: Leucine Rich Repeat Kinase II & X | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T006323 | scaffolds.min_1000bp | scaffold_3041579 | 3929 | 13301 | + |
Gene detail image
| Genome: |
| CRO_T006323 |
| CDS: |
| CRO_T006323 |
| Transcript: |
| CRO_T006323 |
| Protein: |
| CRO_T006323 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07496.12 | zf-CW | 590 | 635 | 5.9e-14 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 10.67135 | |
| SRR122236 | mixed tissue RA CK | 7.89568 | |
| SRR122237 | mixed tissue RB CK | 8.673875 | |
| SRR122250 | callus YE 0.3mg/ml CK | 24.5038 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 18.612 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 23.5576 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 24.9697 | |
| SRR122242 | callus MeJA 100um 0h | 25.3659 | |
| SRR122246 | callus MeJA 100um 6h | 27.8406 | |
| SRR122240 | callus MeJA 100um 12h | 28.36 | |
| SRR122241 | callus MeJA 100um 24h | 34.054 | |
| SRR122239 | flower CK 1 | 32.2564 | |
| SRR1271859 | flower CK 2 | 27.671 | |
| SRR1144633 | healthy flowers CK | 23.69045 | |
| SRR1144634 | flowers PnWB infected | 16.57595 | |
| SRR122257 | hairy root CK | 36.4334 | |
| SRR122258 | hairy root MeJA 250um CK | 24.0883 | |
| SRR122259 | hairy root MeJA 250um 24h | 31.2543 | |
| SRR122256 | hairy root RebH F CK | 27.1158 | |
| SRR122255 | hairy root TDCi CK | 31.0717 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 22.898 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 33.5502 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 41.9921 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 40.5252 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 45.1466 | |
| SRR1820238 | Hairy roots CK GUS 3 | 45.2036 | |
| SRR1820233 | Hairy roots CK GUS 4 | 41.5652 | |
| SRR1820326 | Hairy roots CK GUS 5 | 50.38605 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 24.7905 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 13.1534 | |
| SRR122252 | immature leaf CK | 21.4291 | |
| SRR342023 | leaf CK 1 | 13.1995 | |
| SRR342022 | leaf CK 2 | 19.64165 | |
| SRR342019 | leaf CK 3 | 18.9081 | |
| SRR342017 | leaf CK 4 | 19.02485 | |
| SRR1271857 | leaf CK 5 | 13.12825 | |
| SRR122251 | mature leaf CK | 25.3185 | |
| SRR648705 | root CK 1 | 6.096355 | |
| SRR1271858 | root CK 2 | 56.41955 | |
| SRR122254 | root CK 3 | 23.1635 | |
| SRR648707 | root MeJA 24h | 11.98965 | |
| SRR648709 | root MeJA 24h DSN normalized | 11.26745 | |
| SRR837772 | seedling CK | 11.6687 | |
| SRR122243 | sterile seedlings AE CK 1 | 15.764 | |
| SRR122245 | sterile seedlings AE CK 2 | 16.8732 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 20.9487 | |
| SRR122253 | stem CK | 29.3967 | |
| SRR646572 | shoots CK | 17.31505 | |
| SRR647068 | shoots MeJA 6h 1 | 22.7145 | |
| SRR646596 | shoots MeJA 6h 2 | 21.18725 | |
| SRR646604 | shoots MeJA 24h | 32.47855 | |
| SRR924147 | suspension cells EX ORCA2 CK | 4.824565 | |
| SRR924148 | suspension cells EX ORCA3 CK | 5.641175 |