CRO_T006921's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T006921 | nucleotide binding;protein binding |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T029042 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001012 | Transcription_related, Transcription factor: C2C2-YABBY secondary active sulfate transmembrane transporter activity maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) sulfate transmembrane transport cellular protein metabolic process Cul4-RING E3 ubiquitin ligase complex multicellular organism development small-subunit processome | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T006921 | scaffolds.min_1000bp | scaffold_3062028 | 8719 | 15009 | + |
Gene detail image
| Genome: |
| CRO_T006921 |
| CDS: |
| CRO_T006921 |
| Transcript: |
| CRO_T006921 |
| Protein: |
| CRO_T006921 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process |
| GO:0005730 | nucleolus | cellular_component |
| GO:0032040 | small-subunit processome | cellular_component |
| GO:0080008 | Cul4-RING E3 ubiquitin ligase complex | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00400.29 | WD40 | 112 | 144 | 28.3 |
| PF00400.29 | WD40 | 290 | 312 | 13.5 |
| PF00400.29 | WD40 | 324 | 356 | 23.8 |
| PF04158.11 | Sof1 | 357 | 443 | 5.2e-28 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 27.76995 | |
| SRR122236 | mixed tissue RA CK | 19.04645 | |
| SRR122237 | mixed tissue RB CK | 19.61265 | |
| SRR122250 | callus YE 0.3mg/ml CK | 27.9759 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 24.6955 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 26.6397 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 24.1951 | |
| SRR122242 | callus MeJA 100um 0h | 27.3642 | |
| SRR122246 | callus MeJA 100um 6h | 28.3345 | |
| SRR122240 | callus MeJA 100um 12h | 26.3912 | |
| SRR122241 | callus MeJA 100um 24h | 24.4789 | |
| SRR122239 | flower CK 1 | 26.0321 | |
| SRR1271859 | flower CK 2 | 32.09095 | |
| SRR1144633 | healthy flowers CK | 31.05145 | |
| SRR1144634 | flowers PnWB infected | 31.2239 | |
| SRR122257 | hairy root CK | 39.9282 | |
| SRR122258 | hairy root MeJA 250um CK | 36.8076 | |
| SRR122259 | hairy root MeJA 250um 24h | 46.9352 | |
| SRR122256 | hairy root RebH F CK | 44.6813 | |
| SRR122255 | hairy root TDCi CK | 43.6488 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 33.461 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 41.654 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 36.5755 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 37.9 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 36.4425 | |
| SRR1820238 | Hairy roots CK GUS 3 | 38.6935 | |
| SRR1820233 | Hairy roots CK GUS 4 | 36.2361 | |
| SRR1820326 | Hairy roots CK GUS 5 | 32.9605 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 49.7131 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 39.8227 | |
| SRR122252 | immature leaf CK | 32.9655 | |
| SRR342023 | leaf CK 1 | 29.48785 | |
| SRR342022 | leaf CK 2 | 29.32935 | |
| SRR342019 | leaf CK 3 | 25.1787 | |
| SRR342017 | leaf CK 4 | 21.89215 | |
| SRR1271857 | leaf CK 5 | 35.15955 | |
| SRR122251 | mature leaf CK | 30.2393 | |
| SRR648705 | root CK 1 | 34.3788 | |
| SRR1271858 | root CK 2 | 30.80635 | |
| SRR122254 | root CK 3 | 28.0029 | |
| SRR648707 | root MeJA 24h | 36.2896 | |
| SRR648709 | root MeJA 24h DSN normalized | 34.54835 | |
| SRR837772 | seedling CK | 23.09505 | |
| SRR122243 | sterile seedlings AE CK 1 | 30.4742 | |
| SRR122245 | sterile seedlings AE CK 2 | 37.739 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 29.6714 | |
| SRR122253 | stem CK | 33.3905 | |
| SRR646572 | shoots CK | 36.37245 | |
| SRR647068 | shoots MeJA 6h 1 | 43.04955 | |
| SRR646596 | shoots MeJA 6h 2 | 41.2048 | |
| SRR646604 | shoots MeJA 24h | 38.62935 | |
| SRR924147 | suspension cells EX ORCA2 CK | 36.64465 | |
| SRR924148 | suspension cells EX ORCA3 CK | 36.2347 |