CRO_T007261's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T007261 | HEC/Ndc80p family domain containing protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G54630 | 3.00E-112 | |
| Arabidopsis thaliana | AT3G54630 | 3.00E-112 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T012220 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM002139 | Ndc80 complex condensed nuclear chromosome kinetochore establishment of mitotic spindle orientation attachment of mitotic spindle microtubules to kinetochore translational frameshifting positive regulation of translational elongation peptidyl-lysine modification to peptidyl-hypusine positive regulation of translational termination hypusine biosynthesis mitotic spindle organization deoxyhypusine monooxygenase activity structural constituent of cytoskeleton ribosome binding translation elongation factor activity lyase activity translational initiation translation initiation factor activity | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T007261 | scaffolds.min_1000bp | scaffold_3069323 | 2875 | 6603 | + |
Gene detail image
| Genome: |
| CRO_T007261 |
| CDS: |
| CRO_T007261 |
| Transcript: |
| CRO_T007261 |
| Protein: |
| CRO_T007261 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000132 | establishment of mitotic spindle orientation | biological_process |
| GO:0000778 | condensed nuclear chromosome kinetochore | cellular_component |
| GO:0005200 | structural constituent of cytoskeleton | molecular_function |
| GO:0007052 | mitotic spindle organization | biological_process |
| GO:0031262 | Ndc80 complex | cellular_component |
| GO:0051315 | attachment of mitotic spindle microtubules to kinetochore | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03801.10 | Ndc80_HEC | 42 | 179 | 4.3e-27 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 9.693695 | |
| SRR122236 | mixed tissue RA CK | 12.7384 | |
| SRR122237 | mixed tissue RB CK | 12.5565 | |
| SRR122250 | callus YE 0.3mg/ml CK | 19.726 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 25.2076 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 19.1363 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 25.7952 | |
| SRR122242 | callus MeJA 100um 0h | 27.0176 | |
| SRR122246 | callus MeJA 100um 6h | 14.9728 | |
| SRR122240 | callus MeJA 100um 12h | 12.3674 | |
| SRR122241 | callus MeJA 100um 24h | 21.541 | |
| SRR122239 | flower CK 1 | 13.9584 | |
| SRR1271859 | flower CK 2 | 19.1781 | |
| SRR1144633 | healthy flowers CK | 19.36485 | |
| SRR1144634 | flowers PnWB infected | 11.20885 | |
| SRR122257 | hairy root CK | 23.4902 | |
| SRR122258 | hairy root MeJA 250um CK | 22.1932 | |
| SRR122259 | hairy root MeJA 250um 24h | 15.0976 | |
| SRR122256 | hairy root RebH F CK | 19.8097 | |
| SRR122255 | hairy root TDCi CK | 20.3835 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 22.9841 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 20.7845 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 17.97 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 19.5889 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 19.5212 | |
| SRR1820238 | Hairy roots CK GUS 3 | 17.6521 | |
| SRR1820233 | Hairy roots CK GUS 4 | 17.9269 | |
| SRR1820326 | Hairy roots CK GUS 5 | 16.9313 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 16.5593 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 15.6239 | |
| SRR122252 | immature leaf CK | 18.7187 | |
| SRR342023 | leaf CK 1 | 14.5684 | |
| SRR342022 | leaf CK 2 | 15.1488 | |
| SRR342019 | leaf CK 3 | 13.2716 | |
| SRR342017 | leaf CK 4 | 11.73145 | |
| SRR1271857 | leaf CK 5 | 16.67575 | |
| SRR122251 | mature leaf CK | 10.5104 | |
| SRR648705 | root CK 1 | 14.12095 | |
| SRR1271858 | root CK 2 | 21.5892 | |
| SRR122254 | root CK 3 | 13.2653 | |
| SRR648707 | root MeJA 24h | 14.4173 | |
| SRR648709 | root MeJA 24h DSN normalized | 16.3729 | |
| SRR837772 | seedling CK | 16.5843 | |
| SRR122243 | sterile seedlings AE CK 1 | 14.8927 | |
| SRR122245 | sterile seedlings AE CK 2 | 13.7219 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 14.4777 | |
| SRR122253 | stem CK | 18.6963 | |
| SRR646572 | shoots CK | 11.91755 | |
| SRR647068 | shoots MeJA 6h 1 | 10.57352 | |
| SRR646596 | shoots MeJA 6h 2 | 14.57015 | |
| SRR646604 | shoots MeJA 24h | 14.62625 | |
| SRR924147 | suspension cells EX ORCA2 CK | 19.8607 | |
| SRR924148 | suspension cells EX ORCA3 CK | 18.00035 |