CRO_T007995's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T007995 | cold-regulated |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G20450 | 3.00E-09 | ERD10|EARLY RESPONSIVE TO DEHYDRATION 10;LTI29|LOW TEMPERATURE INDUCED 29;LTI45|LOW TEMPERATURE INDUCED 45 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM000763 | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T007995 | scaffolds.min_1000bp | scaffold_3058912 | 66152 | 67416 | - |
Gene detail image
| Genome: |
| CRO_T007995 |
| CDS: |
| CRO_T007995 |
| Transcript: |
| CRO_T007995 |
| Protein: |
| CRO_T007995 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00257.16 | Dehydrin | 45 | 148 | 6.3e-18 |
| PF00257.16 | Dehydrin | 133 | 189 | 2.3e-13 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 0.599968 | |
| SRR122236 | mixed tissue RA CK | 8.642665 | |
| SRR122237 | mixed tissue RB CK | 8.48507 | |
| SRR122250 | callus YE 0.3mg/ml CK | 7.80811 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 2.4462 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 5.8689 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 9.52209 | |
| SRR122242 | callus MeJA 100um 0h | 5.45879 | |
| SRR122246 | callus MeJA 100um 6h | 0.662413 | |
| SRR122240 | callus MeJA 100um 12h | 0.593636 | |
| SRR122241 | callus MeJA 100um 24h | 0.623191 | |
| SRR122239 | flower CK 1 | 0.047374 | |
| SRR1271859 | flower CK 2 | 0.08480885 | |
| SRR1144633 | healthy flowers CK | 0.2444335 | |
| SRR1144634 | flowers PnWB infected | 0.9196955 | |
| SRR122257 | hairy root CK | 12.1199 | |
| SRR122258 | hairy root MeJA 250um CK | 15.408 | |
| SRR122259 | hairy root MeJA 250um 24h | 1.33013 | |
| SRR122256 | hairy root RebH F CK | 4.47852 | |
| SRR122255 | hairy root TDCi CK | 3.93096 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 5.48455 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0.771441 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 2.7583 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 13.1567 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 1.17691 | |
| SRR1820238 | Hairy roots CK GUS 3 | 2.27365 | |
| SRR1820233 | Hairy roots CK GUS 4 | 4.22908 | |
| SRR1820326 | Hairy roots CK GUS 5 | 0.7656625 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 8.46077 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 21.0415 | |
| SRR122252 | immature leaf CK | 0.26069 | |
| SRR342023 | leaf CK 1 | 0.14140645 | |
| SRR342022 | leaf CK 2 | 0.171023 | |
| SRR342019 | leaf CK 3 | 3.806925 | |
| SRR342017 | leaf CK 4 | 4.727375 | |
| SRR1271857 | leaf CK 5 | 0.2610775 | |
| SRR122251 | mature leaf CK | 0.299213 | |
| SRR648705 | root CK 1 | 0.1406855 | |
| SRR1271858 | root CK 2 | 7.621285 | |
| SRR122254 | root CK 3 | 2.71149 | |
| SRR648707 | root MeJA 24h | 0.08537535 | |
| SRR648709 | root MeJA 24h DSN normalized | 0.296477 | |
| SRR837772 | seedling CK | 1.702865 | |
| SRR122243 | sterile seedlings AE CK 1 | 2.84277 | |
| SRR122245 | sterile seedlings AE CK 2 | 0.380459 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 2.3436 | |
| SRR122253 | stem CK | 0.712154 | |
| SRR646572 | shoots CK | 0.3234655 | |
| SRR647068 | shoots MeJA 6h 1 | 0.147236 | |
| SRR646596 | shoots MeJA 6h 2 | 0 | |
| SRR646604 | shoots MeJA 24h | 0.270557 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0 |