CRO_T008228's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T008228 | Phosphorylase superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G28940 | 1.00E-45 | Phosphorylase superfamily protein |
| Arabidopsis thaliana | AT4G24340 | 8.00E-22 | Phosphorylase superfamily protein |
| Arabidopsis thaliana | AT4G24350 | 3.00E-10 | Phosphorylase superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000292 | nucleoside metabolic process apigeninidin 5-O-glucoside biosynthesis luteolinidin 5-O-glucoside biosynthesis integral component of membrane histidinol dehydrogenase activity L-histidine biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc histidine biosynthetic process sucrose metabolic process catalytic activity sucrose alpha-glucosidase activity Calcium signaling pathway Galactose metabolism cell wall organization or biogenesis pollen development ubiquitin protein ligase binding O-acetyltransferase activity Ubiquitin_Proteasome_system, E2: UBC ubiquitin-dependent protein catabolic process quercetin 7-O-glucosyltransferase activity quercetin 3-O-glucosyltransferase activity NAD binding Biosynthesis of amino acids Ubiquitin mediated proteolysis flavonoid glucuronidation formation of glycosidic bonds, GlycosylTransferases: GTnc Transcription_related, Transcription factor: MYB flavonoid biosynthetic process ubiquitin protein ligase activity protein ubiquitination vacuole | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T008228 | scaffolds.min_1000bp | scaffold_3007225 | 196 | 1201 | - |
Gene detail image
| Genome: |
| CRO_T008228 |
| CDS: |
| CRO_T008228 |
| Transcript: |
| CRO_T008228 |
| Protein: |
| CRO_T008228 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003824 | catalytic activity | molecular_function |
| GO:0009116 | nucleoside metabolic process | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01048.17 | PNP_UDP_1 | 48 | 147 | 2.8e-21 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 2.630445 | |
| SRR122236 | mixed tissue RA CK | 15.20975 | |
| SRR122237 | mixed tissue RB CK | 14.9763 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0.432924 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 11.1459 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 13.5256 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 1.41306 | |
| SRR122242 | callus MeJA 100um 0h | 1.14231 | |
| SRR122246 | callus MeJA 100um 6h | 10.9577 | |
| SRR122240 | callus MeJA 100um 12h | 3.85098 | |
| SRR122241 | callus MeJA 100um 24h | 40.6517 | |
| SRR122239 | flower CK 1 | 25.6612 | |
| SRR1271859 | flower CK 2 | 23.2758 | |
| SRR1144633 | healthy flowers CK | 20.6918 | |
| SRR1144634 | flowers PnWB infected | 0.43589 | |
| SRR122257 | hairy root CK | 0.586739 | |
| SRR122258 | hairy root MeJA 250um CK | 0.591442 | |
| SRR122259 | hairy root MeJA 250um 24h | 0.995619 | |
| SRR122256 | hairy root RebH F CK | 1.84461 | |
| SRR122255 | hairy root TDCi CK | 0.87933 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 0 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0.83407 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 0 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 0.479811 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 1.84612 | |
| SRR1820238 | Hairy roots CK GUS 3 | 1.89931 | |
| SRR1820233 | Hairy roots CK GUS 4 | 0.411279 | |
| SRR1820326 | Hairy roots CK GUS 5 | 4.37247 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 26.7024 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 0.158399 | |
| SRR122252 | immature leaf CK | 0.169112 | |
| SRR342023 | leaf CK 1 | 0 | |
| SRR342022 | leaf CK 2 | 0 | |
| SRR342019 | leaf CK 3 | 0 | |
| SRR342017 | leaf CK 4 | 0 | |
| SRR1271857 | leaf CK 5 | 0.3052105 | |
| SRR122251 | mature leaf CK | 0.242629 | |
| SRR648705 | root CK 1 | 0 | |
| SRR1271858 | root CK 2 | 0.3636755 | |
| SRR122254 | root CK 3 | 0 | |
| SRR648707 | root MeJA 24h | 0 | |
| SRR648709 | root MeJA 24h DSN normalized | 0 | |
| SRR837772 | seedling CK | 0 | |
| SRR122243 | sterile seedlings AE CK 1 | 0.170753 | |
| SRR122245 | sterile seedlings AE CK 2 | 0.154255 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 0.950198 | |
| SRR122253 | stem CK | 0.153994 | |
| SRR646572 | shoots CK | 0.360407 | |
| SRR647068 | shoots MeJA 6h 1 | 0.2435785 | |
| SRR646596 | shoots MeJA 6h 2 | 0.373029 | |
| SRR646604 | shoots MeJA 24h | 2.569365 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0.389518 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0 |