CRO_T008876's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T008876 | nine-cis-epoxycarotenoid dioxygenase |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G18350 | 1.00E-97 | ATNCED2|NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 2 |
| Arabidopsis thaliana | AT1G78390 | 5.00E-95 | ATNCED9|NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 9 |
| Arabidopsis thaliana | AT2G44990 | 4.00E-07 | CCD7|carotenoid cleavage dioxygenase 7 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T007873 CRO_T032660 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000528 | abscisic acid biosynthesis hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription regulator: AUX/IAA xylan 1,4-beta-xylosidase activity alpha-L-arabinofuranosidase activity seed coat development arabinan catabolic process xylan catabolic process oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen Carotenoid biosynthesis drug transmembrane transporter activity antiporter activity Plant hormone signal transduction auxin-activated signaling pathway | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T008876 | scaffolds.min_1000bp | scaffold_2992592 | 1482 | 4363 | - |
Gene detail image
| Genome: |
| CRO_T008876 |
| CDS: |
| CRO_T008876 |
| Transcript: |
| CRO_T008876 |
| Protein: |
| CRO_T008876 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen | molecular_function |
| GO:0055114 | oxidation-reduction process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K09840 | NCED | EC:1.13.11.51 | Carotenoid biosynthesis | ko00906 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| CRO_T008876 | EC-1.13.11.51 | 9-cis-epoxycarotenoid dioxygenase | abscisic acid biosynthesis | PWY-695 |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03055.12 | RPE65 | 116 | 582 | 1.1e-92 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 202.2185 | |
| SRR122236 | mixed tissue RA CK | 91.0366 | |
| SRR122237 | mixed tissue RB CK | 92.78625 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0.0714794 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 0.0311912 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 0.0275703 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 0.0333297 | |
| SRR122242 | callus MeJA 100um 0h | 0 | |
| SRR122246 | callus MeJA 100um 6h | 0.248323 | |
| SRR122240 | callus MeJA 100um 12h | 0.158957 | |
| SRR122241 | callus MeJA 100um 24h | 0 | |
| SRR122239 | flower CK 1 | 1024.01 | |
| SRR1271859 | flower CK 2 | 444.7755 | |
| SRR1144633 | healthy flowers CK | 1729.57 | |
| SRR1144634 | flowers PnWB infected | 76.2718 | |
| SRR122257 | hairy root CK | 0.226043 | |
| SRR122258 | hairy root MeJA 250um CK | 0.195304 | |
| SRR122259 | hairy root MeJA 250um 24h | 0.10959 | |
| SRR122256 | hairy root RebH F CK | 0.0380702 | |
| SRR122255 | hairy root TDCi CK | 0.217777 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 0.201177 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0.367232 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 0.0719917 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 0.0525337 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 0.0932902 | |
| SRR1820238 | Hairy roots CK GUS 3 | 0.155964 | |
| SRR1820233 | Hairy roots CK GUS 4 | 0.101318 | |
| SRR1820326 | Hairy roots CK GUS 5 | 0.28459 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 1.19693 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 0.0911193 | |
| SRR122252 | immature leaf CK | 196.514 | |
| SRR342023 | leaf CK 1 | 80.86145 | |
| SRR342022 | leaf CK 2 | 127.999 | |
| SRR342019 | leaf CK 3 | 78.15865 | |
| SRR342017 | leaf CK 4 | 159.3265 | |
| SRR1271857 | leaf CK 5 | 177.678 | |
| SRR122251 | mature leaf CK | 591.647 | |
| SRR648705 | root CK 1 | 0 | |
| SRR1271858 | root CK 2 | 1.777565 | |
| SRR122254 | root CK 3 | 113.523 | |
| SRR648707 | root MeJA 24h | 0 | |
| SRR648709 | root MeJA 24h DSN normalized | 0 | |
| SRR837772 | seedling CK | 65.0442 | |
| SRR122243 | sterile seedlings AE CK 1 | 31.1249 | |
| SRR122245 | sterile seedlings AE CK 2 | 0.662188 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 3.42534 | |
| SRR122253 | stem CK | 12.3315 | |
| SRR646572 | shoots CK | 105.731 | |
| SRR647068 | shoots MeJA 6h 1 | 92.50565 | |
| SRR646596 | shoots MeJA 6h 2 | 83.8239 | |
| SRR646604 | shoots MeJA 24h | 55.86125 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0 |