CRO_T009552's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T009552 | AMP-dependent synthetase and ligase family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G23790 | 4.00E-21 | AAE16|acyl activating enzyme 16 |
| Arabidopsis thaliana | AT4G14070 | 2.00E-18 | AAE15|acyl-activating enzyme 15 |
| Arabidopsis thaliana | AT3G21240 | 2.00E-15 | 4CL2|4-coumarate:CoA ligase 2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000201 | receptor-mediated endocytosis regulation of anion channel activity detection of bacterium defense response by callose deposition in cell wall motile cilium trans, trans-farnesyl diphosphate biosynthesis geranylgeranyl diphosphate biosynthesis polyisoprenoid biosynthesis superpathway of geranylgeranyl diphosphate biosynthesis II (via MEP) superpathway of geranylgeranyldiphosphate biosynthesis I (via mevalonate) long-chain fatty acid activation transferase activity, transferring alkyl or aryl (other than methyl) groups oleate biosynthesis I (plants) cutin biosynthesis stearate biosynthesis II (bacteria and plants) sporopollenin precursors biosynthesis phosphatidylcholine acyl editing defense response to bacterium suberin monomers biosynthesis palmitate biosynthesis II (bacteria and plants) Fatty acid metabolism Terpenoid backbone biosynthesis Protein_kinases_phosphatases, PPC:1.12.4: Leucine Rich Repeat Kinase XI & XII MAPK signaling pathway - plant endosome transport transporter activity protein kinase activity catalytic activity metabolic process protein phosphorylation | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T009552 | scaffolds.min_1000bp | scaffold_3062602 | 66 | 4874 | + |
Gene detail image
| Genome: |
| CRO_T009552 |
| CDS: |
| CRO_T009552 |
| Transcript: |
| CRO_T009552 |
| Protein: |
| CRO_T009552 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003824 | catalytic activity | molecular_function |
| GO:0008152 | metabolic process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K01897 | ACSL | EC:6.2.1.3 | Fatty acid metabolism | ko01212 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| CRO_T009552 | EC-6.2.1.3 | acyl-CoA synthetase | long-chain fatty acid activation | PWY-5143 |
| CRO_T009552 | EC-6.2.1.3 | cutin biosynthesis | PWY-321 | |
| CRO_T009552 | EC-6.2.1.3 | palmitate-CoA ligase | palmitate biosynthesis II (bacteria and plants) | PWY-5971 |
| CRO_T009552 | EC-6.2.1.3 | stearate biosynthesis II (bacteria and plants) | PWY-5989 | |
| CRO_T009552 | EC-6.2.1.3 | acyl-CoA synthetase | oleate biosynthesis I (plants) | PWY-5147 |
| CRO_T009552 | EC-6.2.1.3 | sporopollenin precursors biosynthesis | PWY-6733 | |
| CRO_T009552 | EC-6.2.1.3 | acyl-CoA synthetase | phosphatidylcholine acyl editing | PWY-6803 |
| CRO_T009552 | EC-6.2.1.3 | suberin monomers biosynthesis | PWY-1121 |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00501.25 | AMP-binding | 4 | 239 | 5.4e-59 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 107.585 | |
| SRR122236 | mixed tissue RA CK | 49.19665 | |
| SRR122237 | mixed tissue RB CK | 48.3052 | |
| SRR122250 | callus YE 0.3mg/ml CK | 88.1441 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 209.966 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 119.431 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 97.2284 | |
| SRR122242 | callus MeJA 100um 0h | 93.1736 | |
| SRR122246 | callus MeJA 100um 6h | 175.25 | |
| SRR122240 | callus MeJA 100um 12h | 158.016 | |
| SRR122241 | callus MeJA 100um 24h | 89.5482 | |
| SRR122239 | flower CK 1 | 191.091 | |
| SRR1271859 | flower CK 2 | 67.0449 | |
| SRR1144633 | healthy flowers CK | 134.524 | |
| SRR1144634 | flowers PnWB infected | 127.7735 | |
| SRR122257 | hairy root CK | 167.685 | |
| SRR122258 | hairy root MeJA 250um CK | 191.414 | |
| SRR122259 | hairy root MeJA 250um 24h | 132.57 | |
| SRR122256 | hairy root RebH F CK | 208.117 | |
| SRR122255 | hairy root TDCi CK | 150.86 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 209.909 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 116.615 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 155.578 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 174.845 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 214.174 | |
| SRR1820238 | Hairy roots CK GUS 3 | 245.554 | |
| SRR1820233 | Hairy roots CK GUS 4 | 196.125 | |
| SRR1820326 | Hairy roots CK GUS 5 | 220.3245 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 565.853 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 104.75 | |
| SRR122252 | immature leaf CK | 83.6074 | |
| SRR342023 | leaf CK 1 | 61.8469 | |
| SRR342022 | leaf CK 2 | 58.9302 | |
| SRR342019 | leaf CK 3 | 71.87395 | |
| SRR342017 | leaf CK 4 | 76.47735 | |
| SRR1271857 | leaf CK 5 | 47.41945 | |
| SRR122251 | mature leaf CK | 118.014 | |
| SRR648705 | root CK 1 | 30.5578 | |
| SRR1271858 | root CK 2 | 61.8611 | |
| SRR122254 | root CK 3 | 60.8914 | |
| SRR648707 | root MeJA 24h | 34.1047 | |
| SRR648709 | root MeJA 24h DSN normalized | 28.9163 | |
| SRR837772 | seedling CK | 68.74905 | |
| SRR122243 | sterile seedlings AE CK 1 | 106.046 | |
| SRR122245 | sterile seedlings AE CK 2 | 83.8536 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 107.413 | |
| SRR122253 | stem CK | 120.451 | |
| SRR646572 | shoots CK | 94.20865 | |
| SRR647068 | shoots MeJA 6h 1 | 87.2202 | |
| SRR646596 | shoots MeJA 6h 2 | 78.9385 | |
| SRR646604 | shoots MeJA 24h | 103.1425 | |
| SRR924147 | suspension cells EX ORCA2 CK | 42.9307 | |
| SRR924148 | suspension cells EX ORCA3 CK | 35.5522 |