CRO_T010069's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T010069 | Leucine-rich repeat protein kinase family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G10850 | 3.00E-70 | Leucine-rich repeat protein kinase family protein |
| Arabidopsis thaliana | AT1G60630 | 5.00E-67 | Leucine-rich repeat protein kinase family protein |
| Arabidopsis thaliana | AT1G31420 | 3.00E-64 | FEI1|FEI 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T031515 CRO_T017363 CRO_T026748 CRO_T016267 CRO_T022319 CRO_T005961 CRO_T011766 CRO_T013495 CRO_T002426 Details... | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001033 | methylammonium transmembrane transport RNA surveillance nuclear-transcribed mRNA catabolic process, no-go decay nuclear-transcribed mRNA catabolic process, non-stop decay methylammonium transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Protein_kinases_phosphatases, PPC:1.13.3: Leucine Rich Repeat Kinase III protein storage vacuole water transport central vacuole water channel activity beta-galactosidase activity endonuclease activity cytoplasmic, membrane-bounded vesicle mRNA surveillance pathway nucleic acid phosphodiester bond hydrolysis peptidase activity plant-type vacuole membrane plasma membrane carbohydrate binding integral component of membrane vacuole plant-type cell wall apoplast cell wall Golgi apparatus chloroplast envelope carbohydrate metabolic process plasmodesma proteolysis protein kinase activity | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T010069 | scaffolds.min_1000bp | scaffold_2983184 | 17406 | 21116 | + |
Gene detail image
| Genome: |
| CRO_T010069 |
| CDS: |
| CRO_T010069 |
| Transcript: |
| CRO_T010069 |
| Protein: |
| CRO_T010069 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.13.3 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.9 | LRRNT_2 | 31 | 68 | 2.1e-07 |
| PF13855.3 | LRR_8 | 145 | 182 | 30.0 |
| PF00560.30 | LRR_1 | 192 | 213 | 12.2 |
| PF00069.22 | Pkinase | 335 | 598 | 2.8e-33 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 18.7087 | |
| SRR122236 | mixed tissue RA CK | 23.47515 | |
| SRR122237 | mixed tissue RB CK | 24.74235 | |
| SRR122250 | callus YE 0.3mg/ml CK | 3.46709 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 3.34436 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 3.72029 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 3.88968 | |
| SRR122242 | callus MeJA 100um 0h | 3.47359 | |
| SRR122246 | callus MeJA 100um 6h | 2.09588 | |
| SRR122240 | callus MeJA 100um 12h | 1.87441 | |
| SRR122241 | callus MeJA 100um 24h | 3.38098 | |
| SRR122239 | flower CK 1 | 4.95938 | |
| SRR1271859 | flower CK 2 | 1.82424 | |
| SRR1144633 | healthy flowers CK | 8.06429 | |
| SRR1144634 | flowers PnWB infected | 12.85385 | |
| SRR122257 | hairy root CK | 9.021 | |
| SRR122258 | hairy root MeJA 250um CK | 15.4206 | |
| SRR122259 | hairy root MeJA 250um 24h | 6.23488 | |
| SRR122256 | hairy root RebH F CK | 4.22076 | |
| SRR122255 | hairy root TDCi CK | 11.9134 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 19.0759 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 7.7009 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 4.25214 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 3.81154 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 3.6564 | |
| SRR1820238 | Hairy roots CK GUS 3 | 2.93416 | |
| SRR1820233 | Hairy roots CK GUS 4 | 2.63505 | |
| SRR1820326 | Hairy roots CK GUS 5 | 3.58749 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 3.21301 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 9.17901 | |
| SRR122252 | immature leaf CK | 38.0031 | |
| SRR342023 | leaf CK 1 | 37.8493 | |
| SRR342022 | leaf CK 2 | 37.0605 | |
| SRR342019 | leaf CK 3 | 35.889 | |
| SRR342017 | leaf CK 4 | 34.47465 | |
| SRR1271857 | leaf CK 5 | 3.98679 | |
| SRR122251 | mature leaf CK | 20.2784 | |
| SRR648705 | root CK 1 | 7.12072 | |
| SRR1271858 | root CK 2 | 5.0218 | |
| SRR122254 | root CK 3 | 62.9064 | |
| SRR648707 | root MeJA 24h | 5.64382 | |
| SRR648709 | root MeJA 24h DSN normalized | 6.097905 | |
| SRR837772 | seedling CK | 12.61185 | |
| SRR122243 | sterile seedlings AE CK 1 | 19.3093 | |
| SRR122245 | sterile seedlings AE CK 2 | 26.1561 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 15.5436 | |
| SRR122253 | stem CK | 25.8894 | |
| SRR646572 | shoots CK | 14.1241 | |
| SRR647068 | shoots MeJA 6h 1 | 10.83505 | |
| SRR646596 | shoots MeJA 6h 2 | 10.6844 | |
| SRR646604 | shoots MeJA 24h | 19.1765 | |
| SRR924147 | suspension cells EX ORCA2 CK | 8.26625 | |
| SRR924148 | suspension cells EX ORCA3 CK | 8.3125 |