Gene detail

CRO_T010327's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T010327	hypothetical protein

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	-	-

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
CFinderADM000046	hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc beta-galactosidase activity vacuole plant-type cell wall carbohydrate binding far-red light photoreceptor activity red light signaling pathway response to very low fluence red light stimulus far-red light signaling pathway response to continuous far red light stimulus by the high-irradiance response system nuclear body phototropism detection of visible light protein-tetrapyrrole linkage response to arsenic-containing substance carbohydrate metabolic process gravitropism negative regulation of translation transcription, DNA-templated red, far-red light phototransduction Circadian rhythm - plant Transcription_related, Transcription factor: Trihelix photomorphogenesis phosphorelay sensor kinase activity signal transduction by protein phosphorylation regulation of transcription, DNA-templated phosphorelay signal transduction system protein-chromophore linkage protein homodimerization activity response to stress sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding	global network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T010327	scaffolds.min_1000bp	scaffold_3046835	1590	2083	+

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T010327
ATGCTTGGTAGTGTTACTCTTGATCTGGATCCAGTTGACAGAGGGCGTAGTACCGTTGGAGGGCTAGGCCCAAGGCGGTAGTACATTTGACTCCATATCATGCTTTGCGGTAGTGGCTATTTCTTAGCAGGTTGGGTCAGGAGGGGCCCACCGGCTACGGTAGCACAGGGCGGCTTGGTAAGTATGCCAAGGATCGTTACCTGTTTATGTATATGTTGTGTGAGGTTGAAAAATCGAACGTTCGTAAAGTATGTTTGGAGTTTAGACTGGTATTGACTACATGATGCCGAAATTTGTCCGAAGTCCCCGTTTCAGGTTCCGGACTCTGTCCGTTGAGCCTATCATGGTGCATGCATGTTTTTTTCTTAAAATTTCAGGTGTCGTGGCAGCGCCGATGTGTCTTGATTCGCTCAGACTTCCCGGCTACGTCCGAACTCTTCAGAAAATTTATATTTTGCATAAAAGTTTTGAAAGCACTTACTTTGCTGGGATGA
CDS:
CRO_T010327
ATGCTTGGTAGTGTTACTCTTGATCTGGATCCAGTTGACAGAGGGCGTAGTACCGTTGGAGGGCTAGGCCCAAGGCGGTTGGGTCAGGAGGGGCCCACCGGCTACGGTAGCACAGGGCGGCTTGGTAAGTATGCCAAGGATCGTTACCTGTTTATGTATATGTTGTGTGAGGTTGAAAAATCGAACGTTCGTAAAGTGTCGTGGCAGCGCCGATGTGTCTTGATTCGCTCAGACTTCCCGGCTACGTCCGAACTCTTCAGAAAATTTATATTTTGCATAAAAGTTTTGAAAGCACTTACTTTGCTGGGATGA
Transcript:
CRO_T010327
ATGCTTGGTAGTGTTACTCTTGATCTGGATCCAGTTGACAGAGGGCGTAGTACCGTTGGAGGGCTAGGCCCAAGGCGGTTGGGTCAGGAGGGGCCCACCGGCTACGGTAGCACAGGGCGGCTTGGTAAGTATGCCAAGGATCGTTACCTGTTTATGTATATGTTGTGTGAGGTTGAAAAATCGAACGTTCGTAAAGTGTCGTGGCAGCGCCGATGTGTCTTGATTCGCTCAGACTTCCCGGCTACGTCCGAACTCTTCAGAAAATTTATATTTTGCATAAAAGTTTTGAAAGCACTTACTTTGCTGGGATGA
Protein:
CRO_T010327
MLGSVTLDLDPVDRGRSTVGGLGPRRLGQEGPTGYGSTGRLGKYAKDRYLFMYMLCEVEKSNVRKVSWQRRCVLIRSDFPATSELFRKFIFCIKVLKALTLLG*

Gene Ontology

GO term	Description	Category
--	--	--

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
--	--	--	--	--

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	0
SRR122236	mixed tissue RA CK	0
SRR122237	mixed tissue RB CK	0
SRR122250	callus YE 0.3mg/ml CK	0.557813
SRR122247	callus YE 0.3mg/ml 6h	0
SRR122248	callus YE 0.3mg/ml 12h	0
SRR122249	callus YE 0.3mg/ml 24h	0
SRR122242	callus MeJA 100um 0h	0
SRR122246	callus MeJA 100um 6h	0
SRR122240	callus MeJA 100um 12h	0
SRR122241	callus MeJA 100um 24h	0
SRR122239	flower CK 1	0.791951
SRR1271859	flower CK 2	0
SRR1144633	healthy flowers CK	0
SRR1144634	flowers PnWB infected	0
SRR122257	hairy root CK	0
SRR122258	hairy root MeJA 250um CK	0
SRR122259	hairy root MeJA 250um 24h	0
SRR122256	hairy root RebH F CK	0.594187
SRR122255	hairy root TDCi CK	0
SRR122260	hairy root TDCi MeJA 250um CK	0
SRR122261	hairy root TDCi MeJA 250um 24h	0
SRR1820161	Hairy roots CK BAI1 14	0
SRR1820157	Hairy roots CK BAI1 18	0
SRR1820149	Hairy roots CK BAI1 19	0.369573
SRR1820238	Hairy roots CK GUS 3	0.494287
SRR1820233	Hairy roots CK GUS 4	0
SRR1820326	Hairy roots CK GUS 5	0
SRR2098821	hairy roots OE AS CK rep1	0
SRR2099440	hairy roots OE AS CK rep2	0
SRR122252	immature leaf CK	0
SRR342023	leaf CK 1	0
SRR342022	leaf CK 2	0
SRR342019	leaf CK 3	0
SRR342017	leaf CK 4	0
SRR1271857	leaf CK 5	0
SRR122251	mature leaf CK	0.625244
SRR648705	root CK 1	0
SRR1271858	root CK 2	0
SRR122254	root CK 3	0
SRR648707	root MeJA 24h	0
SRR648709	root MeJA 24h DSN normalized	0
SRR837772	seedling CK	0
SRR122243	sterile seedlings AE CK 1	0
SRR122245	sterile seedlings AE CK 2	1.19252
SRR122244	sterile seedlings AF MeJA 6um 12d	0.408104
SRR122253	stem CK	0.396836
SRR646572	shoots CK	0
SRR647068	shoots MeJA 6h 1	0
SRR646596	shoots MeJA 6h 2	0
SRR646604	shoots MeJA 24h	0
SRR924147	suspension cells EX ORCA2 CK	0
SRR924148	suspension cells EX ORCA3 CK	0

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