CRO_T010619's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T010619 | MEI2-like protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G61960 | 1.00E-28 | AML1|MEI2-like protein 1 |
| Arabidopsis thaliana | AT5G07290 | 2.00E-27 | AML4|MEI2-like 4 |
| Arabidopsis thaliana | AT1G67770 | 4.00E-26 | TEL2|terminal EAR1-like 2 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T009527 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001008 | nucleobase-containing compound biosynthetic process barrier septum site selection regulation of ruffle assembly pyrimidine deoxyribonucleosides salvage innate immune response ruffle membrane calcium-dependent ATPase activity transport of virus in host, cell to cell chloroplast fission positive regulation of RNA polymerase II transcriptional preinitiation complex assembly phosphate-containing compound metabolic process cytosolic proteasome complex nuclear proteasome complex nucleotide phosphorylation proteasome regulatory particle, base subcomplex myosin complex adenylate kinase activity ATP binding proteasome-activating ATPase activity ER-associated ubiquitin-dependent protein catabolic process adenosine ribonucleotides de novo biosynthesis TBP-class protein binding motor activity Pyrimidine metabolism phosphatidylinositol binding formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.2.2: Receptor Like Cytoplasmic Kinase VII non-membrane spanning protein tyrosine kinase activity peptidyl-tyrosine phosphorylation nucleotide binding Transcription_related, Transcription factor: M-type actin binding DNA binding protein homodimerization activity response to oxidative stress methyltransferase activity Purine metabolism | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T010619 | scaffolds.min_1000bp | scaffold_3067024 | 23554 | 31667 | - |
Gene detail image
| Genome: |
| CRO_T010619 |
| CDS: |
| CRO_T010619 |
| Transcript: |
| CRO_T010619 |
| Protein: |
| CRO_T010619 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.19 | RRM_1 | 198 | 262 | 1.8e-10 |
| PF00076.19 | RRM_1 | 283 | 348 | 1.2e-11 |
| PF04059.9 | RRM_2 | 643 | 679 | 2.9e-13 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 13.4366 | |
| SRR122236 | mixed tissue RA CK | 19.6921 | |
| SRR122237 | mixed tissue RB CK | 18.84465 | |
| SRR122250 | callus YE 0.3mg/ml CK | 17.6764 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 15.311 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 16.8615 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 18.8777 | |
| SRR122242 | callus MeJA 100um 0h | 18.4171 | |
| SRR122246 | callus MeJA 100um 6h | 13.8782 | |
| SRR122240 | callus MeJA 100um 12h | 18.3673 | |
| SRR122241 | callus MeJA 100um 24h | 22.5642 | |
| SRR122239 | flower CK 1 | 87.4905 | |
| SRR1271859 | flower CK 2 | 90.3541 | |
| SRR1144633 | healthy flowers CK | 35.5169 | |
| SRR1144634 | flowers PnWB infected | 21.4603 | |
| SRR122257 | hairy root CK | 47.194 | |
| SRR122258 | hairy root MeJA 250um CK | 47.9349 | |
| SRR122259 | hairy root MeJA 250um 24h | 63.1905 | |
| SRR122256 | hairy root RebH F CK | 42.5834 | |
| SRR122255 | hairy root TDCi CK | 51.2264 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 49.3639 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 65.1273 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 40.2026 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 37.4956 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 48.1422 | |
| SRR1820238 | Hairy roots CK GUS 3 | 38.4282 | |
| SRR1820233 | Hairy roots CK GUS 4 | 35.1493 | |
| SRR1820326 | Hairy roots CK GUS 5 | 46.521 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 36.55 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 27.1692 | |
| SRR122252 | immature leaf CK | 27.8444 | |
| SRR342023 | leaf CK 1 | 14.2335 | |
| SRR342022 | leaf CK 2 | 23.5346 | |
| SRR342019 | leaf CK 3 | 23.9278 | |
| SRR342017 | leaf CK 4 | 25.40515 | |
| SRR1271857 | leaf CK 5 | 20.46535 | |
| SRR122251 | mature leaf CK | 36.998 | |
| SRR648705 | root CK 1 | 12.70765 | |
| SRR1271858 | root CK 2 | 18.23225 | |
| SRR122254 | root CK 3 | 26.019 | |
| SRR648707 | root MeJA 24h | 16.5827 | |
| SRR648709 | root MeJA 24h DSN normalized | 16.99895 | |
| SRR837772 | seedling CK | 17.62945 | |
| SRR122243 | sterile seedlings AE CK 1 | 31.5874 | |
| SRR122245 | sterile seedlings AE CK 2 | 25.9972 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 32.2742 | |
| SRR122253 | stem CK | 41.4245 | |
| SRR646572 | shoots CK | 32.558 | |
| SRR647068 | shoots MeJA 6h 1 | 24.43295 | |
| SRR646596 | shoots MeJA 6h 2 | 25.45875 | |
| SRR646604 | shoots MeJA 24h | 40.8033 | |
| SRR924147 | suspension cells EX ORCA2 CK | 11.58805 | |
| SRR924148 | suspension cells EX ORCA3 CK | 10.3961 |