CRO_T011528's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T011528 | Glycine-rich protein family |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000005 | mannan endo-1,4-beta-mannosidase activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Fructose and mannose metabolism monolayer-surrounded lipid storage body hydrolase activity, acting on ester bonds Phenylpropanoid biosynthesis proteolysis involved in cellular protein catabolic process lipid storage S-methyltransferase activity Transcription_related, Transcription factor: AP2 tricarboxylic acid cycle mannan catabolic process seed oilbody biogenesis glyoxysome response to freezing glyoxylate cycle peroxidase activity magnoflorine biosynthesis 9,9'-di-cis-zeta-carotene desaturation to 7,9,7',9'-tetra-cis-lycopene 9,9'-dicis-carotene:quinone oxidoreductase activity 7,9,9'-tricis-neurosporene:quinone oxidoreductase activity catechol O-methyltransferase activity extracellular space Lysosome Transcription_related, Transcription factor: zf-HD metabolic process carbohydrate metabolic process cysteine-type endopeptidase activity membrane extracellular region serine-type carboxypeptidase activity triacylglycerol degradation response to stimulus oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen Starch and sucrose metabolism Fatty acid elongation lipase activity binding aleurone grain monooxygenase activity cellular oxidant detoxification single-organism metabolic process pectin catabolic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T011528 | scaffolds.min_1000bp | scaffold_3070255 | 29862 | 31256 | - |
Gene detail image
| Genome: |
| CRO_T011528 |
| CDS: |
| CRO_T011528 |
| Transcript: |
| CRO_T011528 |
| Protein: |
| CRO_T011528 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07172.8 | GRP | 1 | 106 | 9.9e-13 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 2.283345 | |
| SRR122236 | mixed tissue RA CK | 45.2103 | |
| SRR122237 | mixed tissue RB CK | 45.6971 | |
| SRR122250 | callus YE 0.3mg/ml CK | 13.4074 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 15.9231 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 26.0167 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 69.7347 | |
| SRR122242 | callus MeJA 100um 0h | 35.3767 | |
| SRR122246 | callus MeJA 100um 6h | 9.19211 | |
| SRR122240 | callus MeJA 100um 12h | 5.22541 | |
| SRR122241 | callus MeJA 100um 24h | 36.8573 | |
| SRR122239 | flower CK 1 | 1.0793 | |
| SRR1271859 | flower CK 2 | 0.8015075 | |
| SRR1144633 | healthy flowers CK | 0 | |
| SRR1144634 | flowers PnWB infected | 105.084 | |
| SRR122257 | hairy root CK | 0 | |
| SRR122258 | hairy root MeJA 250um CK | 0.18883 | |
| SRR122259 | hairy root MeJA 250um 24h | 0 | |
| SRR122256 | hairy root RebH F CK | 0.736165 | |
| SRR122255 | hairy root TDCi CK | 0 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 0 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 0 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 0.139631 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 1.2227 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 0.0904701 | |
| SRR1820238 | Hairy roots CK GUS 3 | 0.241999 | |
| SRR1820233 | Hairy roots CK GUS 4 | 0 | |
| SRR1820326 | Hairy roots CK GUS 5 | 0 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 1.81604 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 0 | |
| SRR122252 | immature leaf CK | 215.647 | |
| SRR342023 | leaf CK 1 | 7.645765 | |
| SRR342022 | leaf CK 2 | 3.873735 | |
| SRR342019 | leaf CK 3 | 8.56054 | |
| SRR342017 | leaf CK 4 | 5.762745 | |
| SRR1271857 | leaf CK 5 | 0.3015695 | |
| SRR122251 | mature leaf CK | 77.6193 | |
| SRR648705 | root CK 1 | 0.0875478 | |
| SRR1271858 | root CK 2 | 0 | |
| SRR122254 | root CK 3 | 59.4682 | |
| SRR648707 | root MeJA 24h | 0.1180925 | |
| SRR648709 | root MeJA 24h DSN normalized | 0 | |
| SRR837772 | seedling CK | 3.34822 | |
| SRR122243 | sterile seedlings AE CK 1 | 640.897 | |
| SRR122245 | sterile seedlings AE CK 2 | 32.3074 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 332.798 | |
| SRR122253 | stem CK | 0.393327 | |
| SRR646572 | shoots CK | 313.645 | |
| SRR647068 | shoots MeJA 6h 1 | 109.9225 | |
| SRR646596 | shoots MeJA 6h 2 | 121.3465 | |
| SRR646604 | shoots MeJA 24h | 116.614 | |
| SRR924147 | suspension cells EX ORCA2 CK | 1.22905 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0 |