CRO_T014617's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T014617 | Major facilitator superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G68570 | 0 | NPF3.1|NRT1/ PTR family 3.1 |
| Arabidopsis thaliana | AT5G01180 | 6.00E-139 | ATPTR5|PEPTIDE TRANSPORTER 5;NPF8.2|NRT1/ PTR family 8.2;PTR5|peptide transporter 5 |
| Arabidopsis thaliana | AT2G02040 | 5.00E-136 | ATPTR2|PEPTIDE TRANSPORTER 2;NPF8.3|NRT1/ PTR family 8.3;NTR1|NITRATE TRANSPORTER 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000620 | ajmaline and sarpagine biosynthesis brassinosteroids inactivation quercetin glucoside biosynthesis (Allium) quercetin gentiotetraside biosynthesis transferase activity, transferring acyl groups quercetin 3-O-glucosyltransferase activity quercetin 7-O-glucosyltransferase activity flavonoid biosynthetic process flavonoid glucuronidation transporter activity formation of glycosidic bonds, GlycosylTransferases: GTnc transport intracellular membrane-bounded organelle | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T014617 | scaffolds.min_1000bp | scaffold_3055400 | 10477 | 13716 | + |
Gene detail image
| Genome: |
| CRO_T014617 |
| CDS: |
| CRO_T014617 |
| Transcript: |
| CRO_T014617 |
| Protein: |
| CRO_T014617 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005215 | transporter activity | molecular_function |
| GO:0006810 | transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00854.18 | PTR2 | 88 | 512 | 1.1e-101 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 67.7656 | |
| SRR122236 | mixed tissue RA CK | 64.41935 | |
| SRR122237 | mixed tissue RB CK | 64.5538 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0.0359239 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 0.125408 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 0.11085 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 0.134006 | |
| SRR122242 | callus MeJA 100um 0h | 0.142184 | |
| SRR122246 | callus MeJA 100um 6h | 0.106973 | |
| SRR122240 | callus MeJA 100um 12h | 0.159777 | |
| SRR122241 | callus MeJA 100um 24h | 0.29819 | |
| SRR122239 | flower CK 1 | 143.037 | |
| SRR1271859 | flower CK 2 | 54.02015 | |
| SRR1144633 | healthy flowers CK | 180.9405 | |
| SRR1144634 | flowers PnWB infected | 44.3504 | |
| SRR122257 | hairy root CK | 11.9122 | |
| SRR122258 | hairy root MeJA 250um CK | 9.66831 | |
| SRR122259 | hairy root MeJA 250um 24h | 17.6248 | |
| SRR122256 | hairy root RebH F CK | 0.53573 | |
| SRR122255 | hairy root TDCi CK | 7.51557 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 3.23543 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 6.96724 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 1.95381 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 4.03957 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 3.84464 | |
| SRR1820238 | Hairy roots CK GUS 3 | 1.78717 | |
| SRR1820233 | Hairy roots CK GUS 4 | 1.1542 | |
| SRR1820326 | Hairy roots CK GUS 5 | 2.334355 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 0.226673 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 3.33647 | |
| SRR122252 | immature leaf CK | 22.1439 | |
| SRR342023 | leaf CK 1 | 28.3385 | |
| SRR342022 | leaf CK 2 | 24.8793 | |
| SRR342019 | leaf CK 3 | 27.2706 | |
| SRR342017 | leaf CK 4 | 25.0127 | |
| SRR1271857 | leaf CK 5 | 24.78385 | |
| SRR122251 | mature leaf CK | 26.737 | |
| SRR648705 | root CK 1 | 35.7303 | |
| SRR1271858 | root CK 2 | 0.378743 | |
| SRR122254 | root CK 3 | 11.0512 | |
| SRR648707 | root MeJA 24h | 30.9738 | |
| SRR648709 | root MeJA 24h DSN normalized | 31.103 | |
| SRR837772 | seedling CK | 262.0355 | |
| SRR122243 | sterile seedlings AE CK 1 | 61.6355 | |
| SRR122245 | sterile seedlings AE CK 2 | 50.9185 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 298.805 | |
| SRR122253 | stem CK | 0.587807 | |
| SRR646572 | shoots CK | 31.4069 | |
| SRR647068 | shoots MeJA 6h 1 | 115.1995 | |
| SRR646596 | shoots MeJA 6h 2 | 116.2305 | |
| SRR646604 | shoots MeJA 24h | 375.38 | |
| SRR924147 | suspension cells EX ORCA2 CK | 227.011 | |
| SRR924148 | suspension cells EX ORCA3 CK | 239.8865 |