CRO_T015915's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T015915 | conserved hypothetical protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G36835 | 8.00E-14 | unknown protein |
| Arabidopsis thaliana | AT2G36835 | 8.00E-14 | unknown protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000364 | scopolin beta-glucosidase activity Transcription_related, Transcription regulator: AUX/IAA beta-glucosidase activity Transcription_related, Transcription factor: MYB-related response to hormone regulation of cellular process Starch and sucrose metabolism cellular process chloroplast envelope carbohydrate metabolic process | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T015915 | scaffolds.min_1000bp | scaffold_3002481 | 10430 | 14239 | - |
Gene detail image
| Genome: |
| CRO_T015915 |
| CDS: |
| CRO_T015915 |
| Transcript: |
| CRO_T015915 |
| Protein: |
| CRO_T015915 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0009941 | chloroplast envelope | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 34.35595 | |
| SRR122236 | mixed tissue RA CK | 68.7057 | |
| SRR122237 | mixed tissue RB CK | 64.04115 | |
| SRR122250 | callus YE 0.3mg/ml CK | 33.9319 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 28.5902 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 27.7587 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 33.6942 | |
| SRR122242 | callus MeJA 100um 0h | 35.291 | |
| SRR122246 | callus MeJA 100um 6h | 34.0441 | |
| SRR122240 | callus MeJA 100um 12h | 33.7906 | |
| SRR122241 | callus MeJA 100um 24h | 43.8754 | |
| SRR122239 | flower CK 1 | 19.7692 | |
| SRR1271859 | flower CK 2 | 16.64545 | |
| SRR1144633 | healthy flowers CK | 31.2263 | |
| SRR1144634 | flowers PnWB infected | 39.77595 | |
| SRR122257 | hairy root CK | 13.3758 | |
| SRR122258 | hairy root MeJA 250um CK | 14.3174 | |
| SRR122259 | hairy root MeJA 250um 24h | 29.214 | |
| SRR122256 | hairy root RebH F CK | 15.2228 | |
| SRR122255 | hairy root TDCi CK | 13.9181 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 12.9534 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 21.9322 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 17.5128 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 17.5245 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 11.4427 | |
| SRR1820238 | Hairy roots CK GUS 3 | 12.8708 | |
| SRR1820233 | Hairy roots CK GUS 4 | 13.242 | |
| SRR1820326 | Hairy roots CK GUS 5 | 14.2983 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 22.5378 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 19.2367 | |
| SRR122252 | immature leaf CK | 37.4454 | |
| SRR342023 | leaf CK 1 | 45.47155 | |
| SRR342022 | leaf CK 2 | 20.8909 | |
| SRR342019 | leaf CK 3 | 22.58865 | |
| SRR342017 | leaf CK 4 | 27.60075 | |
| SRR1271857 | leaf CK 5 | 42.77325 | |
| SRR122251 | mature leaf CK | 33.5978 | |
| SRR648705 | root CK 1 | 32.66065 | |
| SRR1271858 | root CK 2 | 6.484115 | |
| SRR122254 | root CK 3 | 14.6756 | |
| SRR648707 | root MeJA 24h | 38.6729 | |
| SRR648709 | root MeJA 24h DSN normalized | 42.74725 | |
| SRR837772 | seedling CK | 16.1549 | |
| SRR122243 | sterile seedlings AE CK 1 | 35.2651 | |
| SRR122245 | sterile seedlings AE CK 2 | 28.8808 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 26.5408 | |
| SRR122253 | stem CK | 13.2429 | |
| SRR646572 | shoots CK | 37.1555 | |
| SRR647068 | shoots MeJA 6h 1 | 29.2857 | |
| SRR646596 | shoots MeJA 6h 2 | 36.391 | |
| SRR646604 | shoots MeJA 24h | 36.4115 | |
| SRR924147 | suspension cells EX ORCA2 CK | 28.7991 | |
| SRR924148 | suspension cells EX ORCA3 CK | 36.03865 |