CRO_T016368's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T016368 | molybdenum cofactor sulfurase (LOS5) (ABA3) |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G30910 | 2.00E-22 | Molybdenum cofactor sulfurase family protein |
| Arabidopsis thaliana | AT1G30910 | 2.00E-22 | Molybdenum cofactor sulfurase family protein |
| Arabidopsis thaliana | AT5G51920 | 7.00E-16 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000736 | Mo-molybdopterin cofactor sulfurase activity response to temperature stimulus Folate biosynthesis molybdenum ion binding actin filament binding protein binding, bridging Mo-molybdopterin cofactor biosynthetic process cation binding actin filament organization response to osmotic stress single-organism cellular process lyase activity phosphoprotein phosphatase activity hydrolase activity, hydrolyzing O-glycosyl compounds pyridoxal phosphate binding carbohydrate metabolic process transferase activity | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T016368 | scaffolds.min_1000bp | scaffold_2980835 | 23915 | 32332 | - |
Gene detail image
| Genome: |
| CRO_T016368 |
| CDS: |
| CRO_T016368 |
| Transcript: |
| CRO_T016368 |
| Protein: |
| CRO_T016368 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0006777 | Mo-molybdopterin cofactor biosynthetic process | biological_process |
| GO:0006970 | response to osmotic stress | biological_process |
| GO:0008265 | Mo-molybdopterin cofactor sulfurase activity | molecular_function |
| GO:0009266 | response to temperature stimulus | biological_process |
| GO:0016740 | transferase activity | molecular_function |
| GO:0016829 | lyase activity | molecular_function |
| GO:0030151 | molybdenum ion binding | molecular_function |
| GO:0030170 | pyridoxal phosphate binding | molecular_function |
| GO:0044763 | single-organism cellular process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K15631 | ABA3 | EC:2.8.1.9 | Folate biosynthesis | ko00790 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00266.16 | Aminotran_5 | 270 | 530 | 2.1e-11 |
| PF03476.13 | MOSC_N | 570 | 688 | 3.8e-19 |
| PF03473.14 | MOSC | 712 | 853 | 5.2e-32 |
Expression pattern
 | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 10.20251 | |
| SRR122236 | mixed tissue RA CK | 13.1107 | |
| SRR122237 | mixed tissue RB CK | 12.2453 | |
| SRR122250 | callus YE 0.3mg/ml CK | 7.14469 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 7.00961 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 7.15763 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 6.05922 | |
| SRR122242 | callus MeJA 100um 0h | 7.14858 | |
| SRR122246 | callus MeJA 100um 6h | 7.09173 | |
| SRR122240 | callus MeJA 100um 12h | 8.29971 | |
| SRR122241 | callus MeJA 100um 24h | 11.1943 | |
| SRR122239 | flower CK 1 | 54.5645 | |
| SRR1271859 | flower CK 2 | 33.6232 | |
| SRR1144633 | healthy flowers CK | 38.80825 | |
| SRR1144634 | flowers PnWB infected | 10.64565 | |
| SRR122257 | hairy root CK | 11.3079 | |
| SRR122258 | hairy root MeJA 250um CK | 10.2193 | |
| SRR122259 | hairy root MeJA 250um 24h | 19.0041 | |
| SRR122256 | hairy root RebH F CK | 16.0384 | |
| SRR122255 | hairy root TDCi CK | 14.3414 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 9.41999 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 19.739 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 19.5526 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 17.3505 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 24.3675 | |
| SRR1820238 | Hairy roots CK GUS 3 | 20.0395 | |
| SRR1820233 | Hairy roots CK GUS 4 | 17.0993 | |
| SRR1820326 | Hairy roots CK GUS 5 | 21.34485 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 7.93402 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 6.83537 | |
| SRR122252 | immature leaf CK | 9.10326 | |
| SRR342023 | leaf CK 1 | 6.305505 | |
| SRR342022 | leaf CK 2 | 9.050415 | |
| SRR342019 | leaf CK 3 | 10.108315 | |
| SRR342017 | leaf CK 4 | 8.972385 | |
| SRR1271857 | leaf CK 5 | 10.68395 | |
| SRR122251 | mature leaf CK | 9.0027 | |
| SRR648705 | root CK 1 | 7.06884 | |
| SRR1271858 | root CK 2 | 10.86225 | |
| SRR122254 | root CK 3 | 12.3505 | |
| SRR648707 | root MeJA 24h | 8.31483 | |
| SRR648709 | root MeJA 24h DSN normalized | 7.93352 | |
| SRR837772 | seedling CK | 3.20473 | |
| SRR122243 | sterile seedlings AE CK 1 | 11.3855 | |
| SRR122245 | sterile seedlings AE CK 2 | 15.1547 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 13.1907 | |
| SRR122253 | stem CK | 11.5643 | |
| SRR646572 | shoots CK | 11.21915 | |
| SRR647068 | shoots MeJA 6h 1 | 10.439 | |
| SRR646596 | shoots MeJA 6h 2 | 11.6239 | |
| SRR646604 | shoots MeJA 24h | 11.25175 | |
| SRR924147 | suspension cells EX ORCA2 CK | 6.26359 | |
| SRR924148 | suspension cells EX ORCA3 CK | 5.556795 |