CRO_T016529's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T016529 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G16860 | 7.00E-36 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Arabidopsis thaliana | AT4G14820 | 9.00E-34 | Pentatricopeptide repeat (PPR) superfamily protein |
| Arabidopsis thaliana | AT5G27110 | 1.00E-33 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000882 | Ubiquitin_Proteasome_system, E3 adaptor: DWD Protein processing in endoplasmic reticulum chloroplast | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T016529 | scaffolds.min_1000bp | scaffold_3068374 | 31914 | 34028 | + |
Gene detail image
| Genome: |
| CRO_T016529 |
| CDS: |
| CRO_T016529 |
| Transcript: |
| CRO_T016529 |
| Protein: |
| CRO_T016529 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.17 | PPR | 55 | 80 | 0.028 |
| PF13041.3 | PPR_2 | 162 | 210 | 32.2 |
| PF01535.17 | PPR | 347 | 367 | 0.38 |
| PF01535.17 | PPR | 378 | 404 | 0.0017 |
| PF01535.17 | PPR | 406 | 431 | 0.0071 |
| PF13041.3 | PPR_2 | 511 | 559 | 39.0 |
| PF01535.17 | PPR | 586 | 612 | 0.00077 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 3.6213 | |
| SRR122236 | mixed tissue RA CK | 11.89915 | |
| SRR122237 | mixed tissue RB CK | 11.95215 | |
| SRR122250 | callus YE 0.3mg/ml CK | 13.1478 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 6.35246 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 6.42439 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 10.0597 | |
| SRR122242 | callus MeJA 100um 0h | 8.91084 | |
| SRR122246 | callus MeJA 100um 6h | 6.41124 | |
| SRR122240 | callus MeJA 100um 12h | 5.37129 | |
| SRR122241 | callus MeJA 100um 24h | 7.34818 | |
| SRR122239 | flower CK 1 | 6.19111 | |
| SRR1271859 | flower CK 2 | 8.13412 | |
| SRR1144633 | healthy flowers CK | 9.438855 | |
| SRR1144634 | flowers PnWB infected | 7.96332 | |
| SRR122257 | hairy root CK | 9.47981 | |
| SRR122258 | hairy root MeJA 250um CK | 10.4367 | |
| SRR122259 | hairy root MeJA 250um 24h | 12.718 | |
| SRR122256 | hairy root RebH F CK | 11.1412 | |
| SRR122255 | hairy root TDCi CK | 8.92385 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 10.9259 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 11.8335 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 8.51905 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 8.07182 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 9.69155 | |
| SRR1820238 | Hairy roots CK GUS 3 | 10.072 | |
| SRR1820233 | Hairy roots CK GUS 4 | 10.4403 | |
| SRR1820326 | Hairy roots CK GUS 5 | 12.0635 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 5.10799 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 5.50475 | |
| SRR122252 | immature leaf CK | 11.5269 | |
| SRR342023 | leaf CK 1 | 11.2756 | |
| SRR342022 | leaf CK 2 | 12.1712 | |
| SRR342019 | leaf CK 3 | 7.97807 | |
| SRR342017 | leaf CK 4 | 10.7253 | |
| SRR1271857 | leaf CK 5 | 15.12615 | |
| SRR122251 | mature leaf CK | 7.90144 | |
| SRR648705 | root CK 1 | 5.19543 | |
| SRR1271858 | root CK 2 | 11.27475 | |
| SRR122254 | root CK 3 | 11.1806 | |
| SRR648707 | root MeJA 24h | 4.829495 | |
| SRR648709 | root MeJA 24h DSN normalized | 5.79908 | |
| SRR837772 | seedling CK | 6.409865 | |
| SRR122243 | sterile seedlings AE CK 1 | 9.69898 | |
| SRR122245 | sterile seedlings AE CK 2 | 7.71042 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 9.40318 | |
| SRR122253 | stem CK | 15.698 | |
| SRR646572 | shoots CK | 10.94755 | |
| SRR647068 | shoots MeJA 6h 1 | 8.258145 | |
| SRR646596 | shoots MeJA 6h 2 | 10.93415 | |
| SRR646604 | shoots MeJA 24h | 4.63837 | |
| SRR924147 | suspension cells EX ORCA2 CK | 7.67052 | |
| SRR924148 | suspension cells EX ORCA3 CK | 5.898035 |