CRO_T016655's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T016655 | copper/zinc superoxide dismutase |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G08830 | 3.00E-63 | CSD1|copper/zinc superoxide dismutase 1 |
| Arabidopsis thaliana | AT2G28190 | 1.00E-51 | CSD2|copper/zinc superoxide dismutase 2 |
| Arabidopsis thaliana | AT5G18100 | 1.00E-42 | CSD3|copper/zinc superoxide dismutase 3 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T020468 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001184 | endoplasmic reticulum negative regulation of cytokinin dehydrogenase activity UDP-N-acetylglucosamine transmembrane transport negative regulation of ER-associated ubiquitin-dependent protein catabolic process regulation of shoot apical meristem development UDP-N-acetylgalactosamine transport solute:cation symporter activity guanine transmembrane transporter activity uracil transmembrane transporter activity adenine transmembrane transporter activity UDP-N-acetylgalactosamine transmembrane transporter activity guanine import across plasma membrane uracil import across plasma membrane adenine import across plasma membrane hypoxanthine transport reactive oxygen species degradation superoxide radicals degradation pollen exine formation superoxide dismutase activity removal of superoxide radicals cation transmembrane transport Peroxisome carbohydrate transport sugar:proton symporter activity proton transport copper ion binding Golgi membrane plasmodesma | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T016655 | scaffolds.min_1000bp | scaffold_3040297 | 4065 | 9994 | - |
Gene detail image
| Genome: |
| CRO_T016655 |
| CDS: |
| CRO_T016655 |
| Transcript: |
| CRO_T016655 |
| Protein: |
| CRO_T016655 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0004784 | superoxide dismutase activity | molecular_function |
| GO:0005507 | copper ion binding | molecular_function |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0008270 | zinc ion binding | molecular_function |
| GO:0019430 | removal of superoxide radicals | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K04565 | SOD1 | EC:1.15.1.1 | Peroxisome | ko04146 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| CRO_T016655 | EC-1.15.1.1 | superoxide dismutase | superoxide radicals degradation | DETOX1-PWY |
| CRO_T016655 | EC-1.15.1.1 | superoxide dismutase | reactive oxygen species degradation | - |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00080.17 | Sod_Cu | 11 | 146 | 7e-47 |
Expression pattern
 | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 62.89115 | |
| SRR122236 | mixed tissue RA CK | 0 | |
| SRR122237 | mixed tissue RB CK | 0.0533985 | |
| SRR122250 | callus YE 0.3mg/ml CK | 61.3882 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 35.6729 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 52.3965 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 50.7303 | |
| SRR122242 | callus MeJA 100um 0h | 32.2756 | |
| SRR122246 | callus MeJA 100um 6h | 88.9866 | |
| SRR122240 | callus MeJA 100um 12h | 75.4671 | |
| SRR122241 | callus MeJA 100um 24h | 27.5906 | |
| SRR122239 | flower CK 1 | 65.1509 | |
| SRR1271859 | flower CK 2 | 231.5425 | |
| SRR1144633 | healthy flowers CK | 77.38435 | |
| SRR1144634 | flowers PnWB infected | 35.91845 | |
| SRR122257 | hairy root CK | 30.2043 | |
| SRR122258 | hairy root MeJA 250um CK | 24.2879 | |
| SRR122259 | hairy root MeJA 250um 24h | 29.5868 | |
| SRR122256 | hairy root RebH F CK | 48.2341 | |
| SRR122255 | hairy root TDCi CK | 21.4501 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 19.3304 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 36.496 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 77.857 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 62.8649 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 54.7238 | |
| SRR1820238 | Hairy roots CK GUS 3 | 58.1532 | |
| SRR1820233 | Hairy roots CK GUS 4 | 61.8102 | |
| SRR1820326 | Hairy roots CK GUS 5 | 34.40095 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 42.3098 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 43.5719 | |
| SRR122252 | immature leaf CK | 40.1249 | |
| SRR342023 | leaf CK 1 | 48.43315 | |
| SRR342022 | leaf CK 2 | 17.2595 | |
| SRR342019 | leaf CK 3 | 29.47305 | |
| SRR342017 | leaf CK 4 | 36.50935 | |
| SRR1271857 | leaf CK 5 | 91.6873 | |
| SRR122251 | mature leaf CK | 61.6557 | |
| SRR648705 | root CK 1 | 51.12125 | |
| SRR1271858 | root CK 2 | 291.617 | |
| SRR122254 | root CK 3 | 191.167 | |
| SRR648707 | root MeJA 24h | 37.08055 | |
| SRR648709 | root MeJA 24h DSN normalized | 41.9841 | |
| SRR837772 | seedling CK | 128.688 | |
| SRR122243 | sterile seedlings AE CK 1 | 70.7202 | |
| SRR122245 | sterile seedlings AE CK 2 | 107.2 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 74.4835 | |
| SRR122253 | stem CK | 85.5073 | |
| SRR646572 | shoots CK | 113.7345 | |
| SRR647068 | shoots MeJA 6h 1 | 133.005 | |
| SRR646596 | shoots MeJA 6h 2 | 124.4655 | |
| SRR646604 | shoots MeJA 24h | 107.686 | |
| SRR924147 | suspension cells EX ORCA2 CK | 79.7563 | |
| SRR924148 | suspension cells EX ORCA3 CK | 81.01985 |