CRO_T016719's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T016719 | arginine/serine-rich splicing factor |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001709 | positive regulation of RNA polymerase II transcriptional preinitiation complex assembly positive regulation of proteasomal protein catabolic process vacuolar acidification vacuolar proton-transporting V-type ATPase, V0 domain cytosolic proteasome complex nuclear proteasome complex proteasome regulatory particle, base subcomplex cytoplasmic, membrane-bounded vesicle ER-associated ubiquitin-dependent protein catabolic process TBP-class protein binding proteasome-activating ATPase activity ATP hydrolysis coupled proton transport proton-transporting ATPase activity, rotational mechanism Proteasome Spliceosome Oxidative phosphorylation nucleic acid binding nucleotide binding | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T016719 | scaffolds.min_1000bp | scaffold_2985578 | 24138 | 27387 | + |
Gene detail image
| Genome: |
| CRO_T016719 |
| CDS: |
| CRO_T016719 |
| Transcript: |
| CRO_T016719 |
| Protein: |
| CRO_T016719 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0000166 | nucleotide binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K12893 | SFRS4_5_6 | - | Spliceosome | ko03040 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00076.19 | RRM_1 | 4 | 62 | 4.1e-14 |
| PF00076.19 | RRM_1 | 98 | 160 | 2.3e-13 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 29.44185 | |
| SRR122236 | mixed tissue RA CK | 56.3967 | |
| SRR122237 | mixed tissue RB CK | 55.0456 | |
| SRR122250 | callus YE 0.3mg/ml CK | 75.454 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 57.0898 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 61.5214 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 79.9903 | |
| SRR122242 | callus MeJA 100um 0h | 100.977 | |
| SRR122246 | callus MeJA 100um 6h | 57.2771 | |
| SRR122240 | callus MeJA 100um 12h | 59.7125 | |
| SRR122241 | callus MeJA 100um 24h | 76.0391 | |
| SRR122239 | flower CK 1 | 27.8218 | |
| SRR1271859 | flower CK 2 | 34.5071 | |
| SRR1144633 | healthy flowers CK | 42.0449 | |
| SRR1144634 | flowers PnWB infected | 39.6099 | |
| SRR122257 | hairy root CK | 29.788 | |
| SRR122258 | hairy root MeJA 250um CK | 34.0681 | |
| SRR122259 | hairy root MeJA 250um 24h | 28.0744 | |
| SRR122256 | hairy root RebH F CK | 43.9726 | |
| SRR122255 | hairy root TDCi CK | 33.3187 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 40.6418 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 25.4274 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 31.2271 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 28.2771 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 30.1394 | |
| SRR1820238 | Hairy roots CK GUS 3 | 24.8871 | |
| SRR1820233 | Hairy roots CK GUS 4 | 26.9834 | |
| SRR1820326 | Hairy roots CK GUS 5 | 27.0819 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 23.1964 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 24.4423 | |
| SRR122252 | immature leaf CK | 29.3019 | |
| SRR342023 | leaf CK 1 | 32.075 | |
| SRR342022 | leaf CK 2 | 32.0484 | |
| SRR342019 | leaf CK 3 | 26.5579 | |
| SRR342017 | leaf CK 4 | 24.5109 | |
| SRR1271857 | leaf CK 5 | 47.23965 | |
| SRR122251 | mature leaf CK | 24.3058 | |
| SRR648705 | root CK 1 | 20.00855 | |
| SRR1271858 | root CK 2 | 58.21755 | |
| SRR122254 | root CK 3 | 31.6406 | |
| SRR648707 | root MeJA 24h | 15.7005 | |
| SRR648709 | root MeJA 24h DSN normalized | 19.58385 | |
| SRR837772 | seedling CK | 20.393 | |
| SRR122243 | sterile seedlings AE CK 1 | 33.7359 | |
| SRR122245 | sterile seedlings AE CK 2 | 26.0408 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 29.3496 | |
| SRR122253 | stem CK | 32.8531 | |
| SRR646572 | shoots CK | 38.3947 | |
| SRR647068 | shoots MeJA 6h 1 | 36.6618 | |
| SRR646596 | shoots MeJA 6h 2 | 39.41235 | |
| SRR646604 | shoots MeJA 24h | 35.0135 | |
| SRR924147 | suspension cells EX ORCA2 CK | 16.11005 | |
| SRR924148 | suspension cells EX ORCA3 CK | 19.5892 |