CRO_T017818's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T017818 | chromatin remodeling |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G13370 | 0 | CHR5|chromatin remodeling 5 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001581 | sulfate activation for sulfonation male gamete generation hydrogen sulfide biosynthetic process adenylylsulfate kinase activity Sulfur metabolism sulfate assimilation serine-type endopeptidase activity ATP binding proteolysis phosphorylation plasmodesma cell wall | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T017818 | scaffolds.min_1000bp | scaffold_3043976 | 19 | 4956 | + |
Gene detail image
| Genome: |
| CRO_T017818 |
| CDS: |
| CRO_T017818 |
| Transcript: |
| CRO_T017818 |
| Protein: |
| CRO_T017818 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0005634 | nucleus | cellular_component |
| GO:0009506 | plasmodesma | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13907.3 | DUF4208 | 343 | 436 | 5.5e-20 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 28.67735 | |
| SRR122236 | mixed tissue RA CK | 15.76945 | |
| SRR122237 | mixed tissue RB CK | 15.2175 | |
| SRR122250 | callus YE 0.3mg/ml CK | 26.5673 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 36.3429 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 31.8251 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 32.2116 | |
| SRR122242 | callus MeJA 100um 0h | 30.7489 | |
| SRR122246 | callus MeJA 100um 6h | 22.4613 | |
| SRR122240 | callus MeJA 100um 12h | 34.9605 | |
| SRR122241 | callus MeJA 100um 24h | 38.6521 | |
| SRR122239 | flower CK 1 | 32.9065 | |
| SRR1271859 | flower CK 2 | 44.99695 | |
| SRR1144633 | healthy flowers CK | 44.3451 | |
| SRR1144634 | flowers PnWB infected | 33.1632 | |
| SRR122257 | hairy root CK | 29.6628 | |
| SRR122258 | hairy root MeJA 250um CK | 27.7395 | |
| SRR122259 | hairy root MeJA 250um 24h | 35.684 | |
| SRR122256 | hairy root RebH F CK | 40.3004 | |
| SRR122255 | hairy root TDCi CK | 31.1118 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 27.0019 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 36.0718 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 52.7624 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 50.6714 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 52.0057 | |
| SRR1820238 | Hairy roots CK GUS 3 | 55.3286 | |
| SRR1820233 | Hairy roots CK GUS 4 | 51.3338 | |
| SRR1820326 | Hairy roots CK GUS 5 | 54.6629 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 33.245 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 25.6641 | |
| SRR122252 | immature leaf CK | 24.8163 | |
| SRR342023 | leaf CK 1 | 22.40335 | |
| SRR342022 | leaf CK 2 | 32.61095 | |
| SRR342019 | leaf CK 3 | 28.1724 | |
| SRR342017 | leaf CK 4 | 22.6864 | |
| SRR1271857 | leaf CK 5 | 42.30225 | |
| SRR122251 | mature leaf CK | 26.7395 | |
| SRR648705 | root CK 1 | 17.281 | |
| SRR1271858 | root CK 2 | 37.04175 | |
| SRR122254 | root CK 3 | 26.7235 | |
| SRR648707 | root MeJA 24h | 22.4616 | |
| SRR648709 | root MeJA 24h DSN normalized | 20.75655 | |
| SRR837772 | seedling CK | 8.78708 | |
| SRR122243 | sterile seedlings AE CK 1 | 33.3076 | |
| SRR122245 | sterile seedlings AE CK 2 | 34.4372 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 32.521 | |
| SRR122253 | stem CK | 26.3641 | |
| SRR646572 | shoots CK | 34.9105 | |
| SRR647068 | shoots MeJA 6h 1 | 39.32085 | |
| SRR646596 | shoots MeJA 6h 2 | 34.63985 | |
| SRR646604 | shoots MeJA 24h | 46.24395 | |
| SRR924147 | suspension cells EX ORCA2 CK | 19.1384 | |
| SRR924148 | suspension cells EX ORCA3 CK | 20.5402 |