CRO_T018424's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T018424 | Lipase/lipooxygenase, PLAT/LH2 family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G39730 | 4.00E-41 | PLAT1|PLAT domain protein 1 |
| Arabidopsis thaliana | AT2G22170 | 9.00E-41 | PLAT2|PLAT domain protein 2 |
| Arabidopsis thaliana | AT5G07190 | 2.00E-07 | ATS3|seed gene 3 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001175 | plasmodesma spermine synthase activity thermospermine synthase activity xylem vessel member cell differentiation polyamine biosynthetic process superpathway of polyamine biosynthesis II spermidine synthase activity spermidine biosynthesis I spermine biosynthesis calcium-dependent phospholipid binding plasma membrane cytoplasm transmembrane transporter activity auxin polar transport Ribosome biogenesis in eukaryotes hydrolase activity, hydrolyzing O-glycosyl compounds calcium ion binding endoplasmic reticulum carbohydrate metabolic process transmembrane transport integral component of membrane | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T018424 | scaffolds.min_1000bp | scaffold_3070660 | 76202 | 77530 | + |
Gene detail image
| Genome: |
| CRO_T018424 |
| CDS: |
| CRO_T018424 |
| Transcript: |
| CRO_T018424 |
| Protein: |
| CRO_T018424 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01477.20 | PLAT | 29 | 142 | 3.6e-11 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 125.9345 | |
| SRR122236 | mixed tissue RA CK | 64.4115 | |
| SRR122237 | mixed tissue RB CK | 60.41145 | |
| SRR122250 | callus YE 0.3mg/ml CK | 4.25664 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 28.5079 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 14.9192 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 4.65997 | |
| SRR122242 | callus MeJA 100um 0h | 7.5691 | |
| SRR122246 | callus MeJA 100um 6h | 13.3182 | |
| SRR122240 | callus MeJA 100um 12h | 18.0403 | |
| SRR122241 | callus MeJA 100um 24h | 7.0089 | |
| SRR122239 | flower CK 1 | 69.8924 | |
| SRR1271859 | flower CK 2 | 141.704 | |
| SRR1144633 | healthy flowers CK | 135.8435 | |
| SRR1144634 | flowers PnWB infected | 121.3425 | |
| SRR122257 | hairy root CK | 76.3347 | |
| SRR122258 | hairy root MeJA 250um CK | 98.6061 | |
| SRR122259 | hairy root MeJA 250um 24h | 95.3385 | |
| SRR122256 | hairy root RebH F CK | 28.388 | |
| SRR122255 | hairy root TDCi CK | 73.3016 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 106.884 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 109.582 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 18.6709 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 13.5564 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 17.5411 | |
| SRR1820238 | Hairy roots CK GUS 3 | 17.2313 | |
| SRR1820233 | Hairy roots CK GUS 4 | 20.3206 | |
| SRR1820326 | Hairy roots CK GUS 5 | 32.8201 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 10.3899 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 54.8459 | |
| SRR122252 | immature leaf CK | 10.5549 | |
| SRR342023 | leaf CK 1 | 11.9937 | |
| SRR342022 | leaf CK 2 | 7.128095 | |
| SRR342019 | leaf CK 3 | 13.858 | |
| SRR342017 | leaf CK 4 | 11.3325 | |
| SRR1271857 | leaf CK 5 | 10.041415 | |
| SRR122251 | mature leaf CK | 12.1354 | |
| SRR648705 | root CK 1 | 6.61492 | |
| SRR1271858 | root CK 2 | 46.5099 | |
| SRR122254 | root CK 3 | 78.9542 | |
| SRR648707 | root MeJA 24h | 9.20003 | |
| SRR648709 | root MeJA 24h DSN normalized | 8.224655 | |
| SRR837772 | seedling CK | 57.1209 | |
| SRR122243 | sterile seedlings AE CK 1 | 53.1407 | |
| SRR122245 | sterile seedlings AE CK 2 | 77.3506 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 55.8527 | |
| SRR122253 | stem CK | 46.7401 | |
| SRR646572 | shoots CK | 20.05585 | |
| SRR647068 | shoots MeJA 6h 1 | 20.30275 | |
| SRR646596 | shoots MeJA 6h 2 | 20.38995 | |
| SRR646604 | shoots MeJA 24h | 12.29375 | |
| SRR924147 | suspension cells EX ORCA2 CK | 5.191345 | |
| SRR924148 | suspension cells EX ORCA3 CK | 7.0405 |