CRO_T018436's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T018436 | Calcium-binding EF hand family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT5G08580 | 1.00E-58 | Calcium-binding EF hand family protein |
| Arabidopsis thaliana | AT4G27790 | 5.00E-14 | Calcium-binding EF hand family protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000143 | adenine and adenosine salvage II | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T018436 | scaffolds.min_1000bp | scaffold_1875058 | 2975 | 3592 | + |
Gene detail image
| Genome: |
| CRO_T018436 |
| CDS: |
| CRO_T018436 |
| Transcript: |
| CRO_T018436 |
| Protein: |
| CRO_T018436 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 38.7144 | |
| SRR122236 | mixed tissue RA CK | 46.19445 | |
| SRR122237 | mixed tissue RB CK | 42.8978 | |
| SRR122250 | callus YE 0.3mg/ml CK | 24.2876 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 39.3651 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 28.5112 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 37.8435 | |
| SRR122242 | callus MeJA 100um 0h | 42.5909 | |
| SRR122246 | callus MeJA 100um 6h | 26.0541 | |
| SRR122240 | callus MeJA 100um 12h | 33.4356 | |
| SRR122241 | callus MeJA 100um 24h | 46.3307 | |
| SRR122239 | flower CK 1 | 59.9689 | |
| SRR1271859 | flower CK 2 | 40.04665 | |
| SRR1144633 | healthy flowers CK | 50.77855 | |
| SRR1144634 | flowers PnWB infected | 34.8636 | |
| SRR122257 | hairy root CK | 51.2494 | |
| SRR122258 | hairy root MeJA 250um CK | 54.2019 | |
| SRR122259 | hairy root MeJA 250um 24h | 44.4069 | |
| SRR122256 | hairy root RebH F CK | 50.6178 | |
| SRR122255 | hairy root TDCi CK | 57.911 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 69.8004 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 47.4706 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 73.4814 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 58.5156 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 54.6234 | |
| SRR1820238 | Hairy roots CK GUS 3 | 71.7352 | |
| SRR1820233 | Hairy roots CK GUS 4 | 61.7913 | |
| SRR1820326 | Hairy roots CK GUS 5 | 63.67845 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 47.6576 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 49.5381 | |
| SRR122252 | immature leaf CK | 53.5067 | |
| SRR342023 | leaf CK 1 | 66.28715 | |
| SRR342022 | leaf CK 2 | 59.51495 | |
| SRR342019 | leaf CK 3 | 50.5927 | |
| SRR342017 | leaf CK 4 | 52.6507 | |
| SRR1271857 | leaf CK 5 | 35.21455 | |
| SRR122251 | mature leaf CK | 29.929 | |
| SRR648705 | root CK 1 | 49.5033 | |
| SRR1271858 | root CK 2 | 46.5294 | |
| SRR122254 | root CK 3 | 44.4369 | |
| SRR648707 | root MeJA 24h | 56.32545 | |
| SRR648709 | root MeJA 24h DSN normalized | 67.621 | |
| SRR837772 | seedling CK | 35.1623 | |
| SRR122243 | sterile seedlings AE CK 1 | 63.4269 | |
| SRR122245 | sterile seedlings AE CK 2 | 68.1561 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 58.7153 | |
| SRR122253 | stem CK | 36.8108 | |
| SRR646572 | shoots CK | 44.9817 | |
| SRR647068 | shoots MeJA 6h 1 | 61.26435 | |
| SRR646596 | shoots MeJA 6h 2 | 64.13985 | |
| SRR646604 | shoots MeJA 24h | 35.78225 | |
| SRR924147 | suspension cells EX ORCA2 CK | 75.02565 | |
| SRR924148 | suspension cells EX ORCA3 CK | 61.99185 |