CRO_T018572's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T018572 | GTP binding |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G30580 | 0 | GTP binding |
| Arabidopsis thaliana | AT1G56050 | 2.00E-78 | GTP-binding protein-related |
| Arabidopsis thaliana | AT1G07615 | 8.00E-11 | GTP-binding protein Obg/CgtA |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T020624 CRO_T007649 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM001099 | Transcription_related, Transcription factor: RAV ribosomal large subunit binding nucleic acid binding nuclear exosome (RNase complex) Transcription_related, Transcription regulator: mTERF ribosome binding iron-sulfur cluster binding 3'-5' exonuclease activity RNA degradation iron-sulfur cluster assembly chloroplast organization nucleic acid phosphodiester bond hydrolysis RNA processing ATPase activity protein ubiquitination Ubiquitin_Proteasome_system, E3 adaptor: F-box ubiquitin-protein transferase activity GTP binding plasmodesma transcription factor activity, sequence-specific DNA binding iron ion binding transcription, DNA-templated chloroplast stroma | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T018572 | scaffolds.min_1000bp | scaffold_2961435 | 2803 | 12646 | - |
Gene detail image
| Genome: |
| CRO_T018572 |
| CDS: |
| CRO_T018572 |
| Transcript: |
| CRO_T018572 |
| Protein: |
| CRO_T018572 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0005829 | cytosol | cellular_component |
| GO:0009506 | plasmodesma | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0016887 | ATPase activity | molecular_function |
| GO:0043022 | ribosome binding | molecular_function |
| GO:0043023 | ribosomal large subunit binding | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01926.20 | MMR_HSR1 | 26 | 143 | 7.9e-22 |
| PF06071.10 | YchF-GTPase_C | 304 | 387 | 2.6e-40 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 91.4981 | |
| SRR122236 | mixed tissue RA CK | 92.72215 | |
| SRR122237 | mixed tissue RB CK | 92.91625 | |
| SRR122250 | callus YE 0.3mg/ml CK | 193.819 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 221.507 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 174.5 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 228.437 | |
| SRR122242 | callus MeJA 100um 0h | 202.438 | |
| SRR122246 | callus MeJA 100um 6h | 147.27 | |
| SRR122240 | callus MeJA 100um 12h | 137.538 | |
| SRR122241 | callus MeJA 100um 24h | 191.394 | |
| SRR122239 | flower CK 1 | 121.442 | |
| SRR1271859 | flower CK 2 | 61.62245 | |
| SRR1144633 | healthy flowers CK | 163.147 | |
| SRR1144634 | flowers PnWB infected | 164.8445 | |
| SRR122257 | hairy root CK | 120.238 | |
| SRR122258 | hairy root MeJA 250um CK | 122.807 | |
| SRR122259 | hairy root MeJA 250um 24h | 138.262 | |
| SRR122256 | hairy root RebH F CK | 115.84 | |
| SRR122255 | hairy root TDCi CK | 114.426 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 119.714 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 111.483 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 124.027 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 120.973 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 108.939 | |
| SRR1820238 | Hairy roots CK GUS 3 | 124.124 | |
| SRR1820233 | Hairy roots CK GUS 4 | 129.901 | |
| SRR1820326 | Hairy roots CK GUS 5 | 131.522 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 79.053 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 77.9721 | |
| SRR122252 | immature leaf CK | 99.7208 | |
| SRR342023 | leaf CK 1 | 131.5665 | |
| SRR342022 | leaf CK 2 | 108.65 | |
| SRR342019 | leaf CK 3 | 85.59715 | |
| SRR342017 | leaf CK 4 | 91.58115 | |
| SRR1271857 | leaf CK 5 | 52.4736 | |
| SRR122251 | mature leaf CK | 84.5037 | |
| SRR648705 | root CK 1 | 137.4155 | |
| SRR1271858 | root CK 2 | 61.29205 | |
| SRR122254 | root CK 3 | 87.2562 | |
| SRR648707 | root MeJA 24h | 132.772 | |
| SRR648709 | root MeJA 24h DSN normalized | 132.6255 | |
| SRR837772 | seedling CK | 51.0791 | |
| SRR122243 | sterile seedlings AE CK 1 | 102.704 | |
| SRR122245 | sterile seedlings AE CK 2 | 95.0885 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 107.707 | |
| SRR122253 | stem CK | 114.973 | |
| SRR646572 | shoots CK | 103.1745 | |
| SRR647068 | shoots MeJA 6h 1 | 108.528 | |
| SRR646596 | shoots MeJA 6h 2 | 103.984 | |
| SRR646604 | shoots MeJA 24h | 108.8685 | |
| SRR924147 | suspension cells EX ORCA2 CK | 166.861 | |
| SRR924148 | suspension cells EX ORCA3 CK | 157.688 |