Gene detail

CRO_T018830's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T018830	cytochrome P450, family 72, subfamily A, polypeptide

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT3G14620	3.00E-111	CYP72A8\|cytochrome P450, family 72, subfamily A, polypeptide 8
Arabidopsis thaliana	AT5G24900	2.00E-55	CYP714A2\|cytochrome P450, family 714, subfamily A, polypeptide 2;ELA2\|EUI-like p450 A2
Arabidopsis thaliana	AT3G53130	9.00E-25	CYP97C1\|CYTOCHROME P450 97C1;LUT1\|LUTEIN DEFICIENT 1

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
TreatCFM001163	secologanin and strictosidine biosynthesis Cytochrome_P450, Cytochrome P450: CYP72A Transcription_related, Transcription factor: C2H2	treat preferential network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T018830	scaffolds.min_1000bp	scaffold_3058249	16612	19136	-

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T018830
ATGGAAAACCTTTTTCTGAAAATTACTTCAATATATCTGCTATTCTATTGTTTGTTTAGAGCTTTTTATTCCATTTTATGGAAACCAAAATGGCTTGAAAGGAAACTAAAACAGCAAGGGATTAGAGGTAATCCCTACAAACCATTAGTAGGAGACATGAAAGATTTCATCAATCAAATAAATGAAGCATGTTCCAAACCAATTAGTCTCTGTAATGAGATTGTGCCCCGGGCTGATCCATTCACACACAATACTGTACAAAAATACGGTAAGTGCGTCTTCTACTCAATTGATGAATGCAGTTCGAATCTTTTATAACATTCTTTATCATTCTCTATTTATAACATTAACTGATTTATGGCACCATCTAAAGTGATTCTTAATATTAATAGATGTACAAAAATAATTTGATGATAAATAAATAATTATAACTCCTTATGAAGAACCAAAAATAGTTTATCGGCATTTATAGCCATTTTCCCTTATTAGTAAAAATTATCAAATAAAAGATAAATTCAAAAAAAAGCCTACTATAAACAAAAGATTACATAAGATGTTACAAGCATTGTTAGGTGTTTGATGAACGCTACCATGCTGTATATTTCTAGGGAAAACATCAATATTTTGGGCAGGGACTACACCTAGGGTGATCTTGAAGGACCCAGAGCTGATCAAAGAAGTGCTATCTAACAAGCAAGGACACATTGGAATGCCACCAATGAACCCTCTTATACTCATTTTATCAAAGGGGCTGTCAACTCTAGATGGTGAGGACTGGTTTAGACACAGGAATATAATAGCACCAGCTTTCCATACTGAGAAAATCAAGGTCTTTATTTTCAACTTTCAAAATCAACATTTTTATGATACTGAGTTGAGATTTTTCATATTCTTTTGGCTTCTATTGTTTCTAACAGGCGACGATACCGGCAGTTTCAGAAACTTGTTTCCTGTTAATAGAAAAATGGAAGAAAACAAGTTCTCTTACCGGAACCTGTGAAATAGATGTTTGGCCAGAGTTTCAACAACTTACAGGGGATATTATTTCTAGGGCAGCCTTTGGAAGCAACTTTGAAGAAGGAAATATGATCATAAAACTTCAGAAAGAGCTGCAAAAGTTGGTTTTAGAAGCAATGCAGACCTTATATATTCCGGGTTTCAGGTACATTTTCAATCTCATTTATCAATGTCTAATAAGCTCAGGAACAATAGCACGATTTAATTTCCAATCTTATACTAATTCGCAGATTTATACCAACAAGAAAGAACCAGAGAAGGAAGAGTCTGAACAAAAGCATAACTGCAATGCTAAGAACTTTAATTGAAAGAAAGGAAAGCAAGATCAGAACTGGAGGAGCAAATGGTAAAGATTTACTCAGCCTGCTTTTGAAATCTAACAAGGAAAGTGATCAAGAATCTACAGCAAGCAATAAAAAGAATAACCATATGACCATGGATGAAATAATAGAAGAATGTAAGCAGTTCTACCTTGCCGGATCTGAGACAACCTCAAGTTTGTTAACATGGACAATGATTGTCTTGGCCATGTACCCAAATTGGCAAGAAAAAGCAAGAGAAGAAGTTATGAGAGTATGTCAGAAACAGCCACCAACTGCTGCAAATATAAGCCAACTTAAAGTAGTGAGTATACTTCAGAGAAAATAGCCCATTTATCCCCTATTTATGTTTAGCAGGGACTCAGTCCCTAACCTTTATTTACAACATTAAGAATACATAACTTATTTGCGCTTAACGGACTCAGTCTCTAACCTTTGTTTTCAGCATAAAGATTCTCTAATCTATTTATGCTCGTCCTAAAGAATCTCCCACCACCCTTTTTAAAATAGTCATGTTCTGGTGGCGAGATTCTTTAGGACGTGTGTAAATAAGTTAGGTATTCTTAATGCTGAAAACATAGGTTTGGGACTAAATCCGCTATCCGCAAATAGGTTAGGAATTCTTAATACTGAAAACAAAGGTTAGGGGCTAAATGGGCTATTTTCTCTATACTGAACTTTACACAGAATTATTATCGTTTCCTTTTGTTACTCTATTGTATCTTCTAAAATTTTATTGAAATGTCTATGAACTTCTTGCAGATGACTATGATACTACATGAAGTCCTAAGATTATATCCTCCAGTTATTGCTTTGTATAAACATACCTACAAGGAAACCAAAATAGGAAATCTCTCAATCCCAGCAGGGGTGGATCTTGTGCTACCAATGTTGCTAGTTAATCATGATTATGAAATATGGGGCAATGATGCAGAAGAATTTAAACCATAGAGATTCTCAGAAGGGGTTTCAAAGGCATCTAACGATCAGTTAGCATTCTTCCCTTTTGGATGGGGACCAAAGACTTGTATTGGCCAGAATTTCGCGCTGGTAGAAGCAAAGACAGCATTATCTATGATACTGCAGAATTTCTCATTTGGATTATCATCATCATACTGTCATGCTCCTAATACAGGCATGACTCTTCAACCACAACATGGAGCTCTTATTATCTTACACCAAATTTAG
CDS:
CRO_T018830
ATGGAAAACCTTTTTCTGAAAATTACTTCAATATATCTGCTATTCTATTGTTTGTTTAGAGCTTTTTATTCCATTTTATGGAAACCAAAATGGCTTGAAAGGAAACTAAAACAGCAAGGGATTAGAGGTAATCCCTACAAACCATTAGTAGGAGACATGAAAGATTTCATCAATCAAATAAATGAAGCATGTTCCAAACCAATTAGTCTCTGTAATGAGATTGTGCCCCGGGCTGATCCATTCACACACAATACTGTACAAAAATACGGGAAAACATCAATATTTTGGGCAGGGACTACACCTAGGGTGATCTTGAAGGACCCAGAGCTGATCAAAGAAGTGCTATCTAACAAGCAAGGACACATTGGAATGCCACCAATGAACCCTCTTATACTCATTTTATCAAAGGGGCTGTCAACTCTAGATGGTGAGGACTGGTTTAGACACAGGAATATAATAGCACCAGCTTTCCATACTGAGAAAATCAAGGCGACGATACCGGCAGTTTCAGAAACTTGTTTCCTGTTAATAGAAAAATGGAAGAAAACAAGTTCTCTTACCGGAACCTGTGAAATAGATGTTTGGCCAGAGTTTCAACAACTTACAGGGGATATTATTTCTAGGGCAGCCTTTGGAAGCAACTTTGAAGAAGGAAATATGATCATAAAACTTCAGAAAGAGCTGCAAAAGTTGGTTTTAGAAGCAATGCAGACCTTATATATTCCGGGTTTCAGATTTATACCAACAAGAAAGAACCAGAGAAGGAAGAGTCTGAACAAAAGCATAACTGCAATGCTAAGAACTTTAATTGAAAGAAAGGAAAGCAAGATCAGAACTGGAGGAGCAAATGGTAAAGATTTACTCAGCCTGCTTTTGAAATCTAACAAGGAAAGTGATCAAGAATCTACAGCAAGCAATAAAAAGAATAACCATATGACCATGGATGAAATAATAGAAGAATGTAAGCAGTTCTACCTTGCCGGATCTGAGACAACCTCAAGTTTGTTAACATGGACAATGATTGTCTTGGCCATGTACCCAAATTGGCAAGAAAAAGCAAGAGAAGAAGTTATGAGAGTATGTCAGAAACAGCCACCAACTGCTGCAAATATAAGCCAACTTAAAGTAATGACTATGATACTACATGAAGTCCTAAGATTATATCCTCCAGTTATTGCTTTGTATAAACATACCTACAAGGAAACCAAAATAGGAAATCTCTCAATCCCAGCAGGGGTGGATCTTGTGCTACCAATGTTGCTAAGATTCTCAGAAGGGGTTTCAAAGGCATCTAACGATCAGTTAGCATTCTTCCCTTTTGGATGGGGACCAAAGACTTGTATTGGCCAGAATTTCGCGCTGGTAGAAGCAAAGACAGCATTATCTATGATACTGCAGAATTTCTCATTTGGATTATCATCATCATACTGTCATGCTCCTAATACAGGCATGACTCTTCAACCACAACATGGAGCTCTTATTATCTTACACCAAATTTAG
Transcript:
CRO_T018830
ATGGAAAACCTTTTTCTGAAAATTACTTCAATATATCTGCTATTCTATTGTTTGTTTAGAGCTTTTTATTCCATTTTATGGAAACCAAAATGGCTTGAAAGGAAACTAAAACAGCAAGGGATTAGAGGTAATCCCTACAAACCATTAGTAGGAGACATGAAAGATTTCATCAATCAAATAAATGAAGCATGTTCCAAACCAATTAGTCTCTGTAATGAGATTGTGCCCCGGGCTGATCCATTCACACACAATACTGTACAAAAATACGGGAAAACATCAATATTTTGGGCAGGGACTACACCTAGGGTGATCTTGAAGGACCCAGAGCTGATCAAAGAAGTGCTATCTAACAAGCAAGGACACATTGGAATGCCACCAATGAACCCTCTTATACTCATTTTATCAAAGGGGCTGTCAACTCTAGATGGTGAGGACTGGTTTAGACACAGGAATATAATAGCACCAGCTTTCCATACTGAGAAAATCAAGGCGACGATACCGGCAGTTTCAGAAACTTGTTTCCTGTTAATAGAAAAATGGAAGAAAACAAGTTCTCTTACCGGAACCTGTGAAATAGATGTTTGGCCAGAGTTTCAACAACTTACAGGGGATATTATTTCTAGGGCAGCCTTTGGAAGCAACTTTGAAGAAGGAAATATGATCATAAAACTTCAGAAAGAGCTGCAAAAGTTGGTTTTAGAAGCAATGCAGACCTTATATATTCCGGGTTTCAGATTTATACCAACAAGAAAGAACCAGAGAAGGAAGAGTCTGAACAAAAGCATAACTGCAATGCTAAGAACTTTAATTGAAAGAAAGGAAAGCAAGATCAGAACTGGAGGAGCAAATGGTAAAGATTTACTCAGCCTGCTTTTGAAATCTAACAAGGAAAGTGATCAAGAATCTACAGCAAGCAATAAAAAGAATAACCATATGACCATGGATGAAATAATAGAAGAATGTAAGCAGTTCTACCTTGCCGGATCTGAGACAACCTCAAGTTTGTTAACATGGACAATGATTGTCTTGGCCATGTACCCAAATTGGCAAGAAAAAGCAAGAGAAGAAGTTATGAGAGTATGTCAGAAACAGCCACCAACTGCTGCAAATATAAGCCAACTTAAAGTAATGACTATGATACTACATGAAGTCCTAAGATTATATCCTCCAGTTATTGCTTTGTATAAACATACCTACAAGGAAACCAAAATAGGAAATCTCTCAATCCCAGCAGGGGTGGATCTTGTGCTACCAATGTTGCTAAGATTCTCAGAAGGGGTTTCAAAGGCATCTAACGATCAGTTAGCATTCTTCCCTTTTGGATGGGGACCAAAGACTTGTATTGGCCAGAATTTCGCGCTGGTAGAAGCAAAGACAGCATTATCTATGATACTGCAGAATTTCTCATTTGGATTATCATCATCATACTGTCATGCTCCTAATACAGGCATGACTCTTCAACCACAACATGGAGCTCTTATTATCTTACACCAAATTTAG
Protein:
CRO_T018830
MENLFLKITSIYLLFYCLFRAFYSILWKPKWLERKLKQQGIRGNPYKPLVGDMKDFINQINEACSKPISLCNEIVPRADPFTHNTVQKYGKTSIFWAGTTPRVILKDPELIKEVLSNKQGHIGMPPMNPLILILSKGLSTLDGEDWFRHRNIIAPAFHTEKIKATIPAVSETCFLLIEKWKKTSSLTGTCEIDVWPEFQQLTGDIISRAAFGSNFEEGNMIIKLQKELQKLVLEAMQTLYIPGFRFIPTRKNQRRKSLNKSITAMLRTLIERKESKIRTGGANGKDLLSLLLKSNKESDQESTASNKKNNHMTMDEIIEECKQFYLAGSETTSSLLTWTMIVLAMYPNWQEKAREEVMRVCQKQPPTAANISQLKVMTMILHEVLRLYPPVIALYKHTYKETKIGNLSIPAGVDLVLPMLLRFSEGVSKASNDQLAFFPFGWGPKTCIGQNFALVEAKTALSMILQNFSFGLSSSYCHAPNTGMTLQPQHGALIILHQI*

Genome:

CRO_T018830

ATGGAAAACCTTTTTCTGAAAATTACTTCAATATATCTGCTATTCTATTGTTTGTTTAGAGCTTTTTATTCCATTTTATGGAAACCAAAATGGCTTGAAAGGAAACTAAAACAGCAAGGGATTAGAGGTAATCCCTACAAACCATTAGTAGGAGACATGAAAGATTTCATCAATCAAATAAATGAAGCATGTTCCAAACCAATTAGTCTCTGTAATGAGATTGTGCCCCGGGCTGATCCATTCACACACAATACTGTACAAAAATACGGTAAGTGCGTCTTCTACTCAATTGATGAATGCAGTTCGAATCTTTTATAACATTCTTTATCATTCTCTATTTATAACATTAACTGATTTATGGCACCATCTAAAGTGATTCTTAATATTAATAGATGTACAAAAATAATTTGATGATAAATAAATAATTATAACTCCTTATGAAGAACCAAAAATAGTTTATCGGCATTTATAGCCATTTTCCCTTATTAGTAAAAATTATCAAATAAAAGATAAATTCAAAAAAAAGCCTACTATAAACAAAAGATTACATAAGATGTTACAAGCATTGTTAGGTGTTTGATGAACGCTACCATGCTGTATATTTCTAGGGAAAACATCAATATTTTGGGCAGGGACTACACCTAGGGTGATCTTGAAGGACCCAGAGCTGATCAAAGAAGTGCTATCTAACAAGCAAGGACACATTGGAATGCCACCAATGAACCCTCTTATACTCATTTTATCAAAGGGGCTGTCAACTCTAGATGGTGAGGACTGGTTTAGACACAGGAATATAATAGCACCAGCTTTCCATACTGAGAAAATCAAGGTCTTTATTTTCAACTTTCAAAATCAACATTTTTATGATACTGAGTTGAGATTTTTCATATTCTTTTGGCTTCTATTGTTTCTAACAGGCGACGATACCGGCAGTTTCAGAAACTTGTTTCCTGTTAATAGAAAAATGGAAGAAAACAAGTTCTCTTACCGGAACCTGTGAAATAGATGTTTGGCCAGAGTTTCAACAACTTACAGGGGATATTATTTCTAGGGCAGCCTTTGGAAGCAACTTTGAAGAAGGAAATATGATCATAAAACTTCAGAAAGAGCTGCAAAAGTTGGTTTTAGAAGCAATGCAGACCTTATATATTCCGGGTTTCAGGTACATTTTCAATCTCATTTATCAATGTCTAATAAGCTCAGGAACAATAGCACGATTTAATTTCCAATCTTATACTAATTCGCAGATTTATACCAACAAGAAAGAACCAGAGAAGGAAGAGTCTGAACAAAAGCATAACTGCAATGCTAAGAACTTTAATTGAAAGAAAGGAAAGCAAGATCAGAACTGGAGGAGCAAATGGTAAAGATTTACTCAGCCTGCTTTTGAAATCTAACAAGGAAAGTGATCAAGAATCTACAGCAAGCAATAAAAAGAATAACCATATGACCATGGATGAAATAATAGAAGAATGTAAGCAGTTCTACCTTGCCGGATCTGAGACAACCTCAAGTTTGTTAACATGGACAATGATTGTCTTGGCCATGTACCCAAATTGGCAAGAAAAAGCAAGAGAAGAAGTTATGAGAGTATGTCAGAAACAGCCACCAACTGCTGCAAATATAAGCCAACTTAAAGTAGTGAGTATACTTCAGAGAAAATAGCCCATTTATCCCCTATTTATGTTTAGCAGGGACTCAGTCCCTAACCTTTATTTACAACATTAAGAATACATAACTTATTTGCGCTTAACGGACTCAGTCTCTAACCTTTGTTTTCAGCATAAAGATTCTCTAATCTATTTATGCTCGTCCTAAAGAATCTCCCACCACCCTTTTTAAAATAGTCATGTTCTGGTGGCGAGATTCTTTAGGACGTGTGTAAATAAGTTAGGTATTCTTAATGCTGAAAACATAGGTTTGGGACTAAATCCGCTATCCGCAAATAGGTTAGGAATTCTTAATACTGAAAACAAAGGTTAGGGGCTAAATGGGCTATTTTCTCTATACTGAACTTTACACAGAATTATTATCGTTTCCTTTTGTTACTCTATTGTATCTTCTAAAATTTTATTGAAATGTCTATGAACTTCTTGCAGATGACTATGATACTACATGAAGTCCTAAGATTATATCCTCCAGTTATTGCTTTGTATAAACATACCTACAAGGAAACCAAAATAGGAAATCTCTCAATCCCAGCAGGGGTGGATCTTGTGCTACCAATGTTGCTAGTTAATCATGATTATGAAATATGGGGCAATGATGCAGAAGAATTTAAACCATAGAGATTCTCAGAAGGGGTTTCAAAGGCATCTAACGATCAGTTAGCATTCTTCCCTTTTGGATGGGGACCAAAGACTTGTATTGGCCAGAATTTCGCGCTGGTAGAAGCAAAGACAGCATTATCTATGATACTGCAGAATTTCTCATTTGGATTATCATCATCATACTGTCATGCTCCTAATACAGGCATGACTCTTCAACCACAACATGGAGCTCTTATTATCTTACACCAAATTTAG

CDS:

Transcript:

Protein:

Gene Ontology

GO term	Description	Category
GO:0004497	monooxygenase activity	molecular_function
GO:0016020	membrane	cellular_component
GO:0046872	metal ion binding	molecular_function

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP72A

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
--	--	--	--	--

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
CRO_T018830	EC-1.3.3.9	secologanin synthase	secologanin and strictosidine biosynthesis	PWY-5290

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00067.19	p450	83	481	8.9e-68

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	0
SRR122236	mixed tissue RA CK	0.3267875
SRR122237	mixed tissue RB CK	0.4540705
SRR122250	callus YE 0.3mg/ml CK	9.6168
SRR122247	callus YE 0.3mg/ml 6h	3.96449
SRR122248	callus YE 0.3mg/ml 12h	4.54809
SRR122249	callus YE 0.3mg/ml 24h	6.12911
SRR122242	callus MeJA 100um 0h	13.7076
SRR122246	callus MeJA 100um 6h	1.29512
SRR122240	callus MeJA 100um 12h	2.04189
SRR122241	callus MeJA 100um 24h	2.60735
SRR122239	flower CK 1	0.0686099
SRR1271859	flower CK 2	0.01019715
SRR1144633	healthy flowers CK	0.0882586
SRR1144634	flowers PnWB infected	0.711958
SRR122257	hairy root CK	2.79447
SRR122258	hairy root MeJA 250um CK	0.792245
SRR122259	hairy root MeJA 250um 24h	2.51911
SRR122256	hairy root RebH F CK	3.24304
SRR122255	hairy root TDCi CK	1.37419
SRR122260	hairy root TDCi MeJA 250um CK	0.924878
SRR122261	hairy root TDCi MeJA 250um 24h	2.35864
SRR1820161	Hairy roots CK BAI1 14	2.33712
SRR1820157	Hairy roots CK BAI1 18	1.7765
SRR1820149	Hairy roots CK BAI1 19	4.13271
SRR1820238	Hairy roots CK GUS 3	12.7845
SRR1820233	Hairy roots CK GUS 4	4.88807
SRR1820326	Hairy roots CK GUS 5	2.93067
SRR2098821	hairy roots OE AS CK rep1	32.0271
SRR2099440	hairy roots OE AS CK rep2	6.14472
SRR122252	immature leaf CK	0
SRR342023	leaf CK 1	0
SRR342022	leaf CK 2	0.0982983
SRR342019	leaf CK 3	0
SRR342017	leaf CK 4	0
SRR1271857	leaf CK 5	0
SRR122251	mature leaf CK	0
SRR648705	root CK 1	0.924148
SRR1271858	root CK 2	0.1572205
SRR122254	root CK 3	0.035062
SRR648707	root MeJA 24h	0.3471075
SRR648709	root MeJA 24h DSN normalized	0.429218
SRR837772	seedling CK	0.494948
SRR122243	sterile seedlings AE CK 1	1.9823
SRR122245	sterile seedlings AE CK 2	1.37751
SRR122244	sterile seedlings AF MeJA 6um 12d	0.636402
SRR122253	stem CK	0.309416
SRR646572	shoots CK	0.233381
SRR647068	shoots MeJA 6h 1	0
SRR646596	shoots MeJA 6h 2	0.160692
SRR646604	shoots MeJA 24h	0.0652847
SRR924147	suspension cells EX ORCA2 CK	2.36864
SRR924148	suspension cells EX ORCA3 CK	1.280685

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