CRO_T019588's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T019588 | Leucine-rich repeat protein kinase family protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T020572 CRO_T016267 CRO_T014106 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000809 | protein N-glycosylation (eukaryotic, high mannose) formation of glycosidic bonds, GlycosylTransferases: GTnc Protein_kinases_phosphatases, PPC:1.Other: Other Protein Kinase Transcription_related, Transcription regulator: SET histone lysine methylation Base excision repair Lysine degradation N-Glycan biosynthesis nuclease activity histone-lysine N-methyltransferase activity chromosome histone binding cellular process embryo development ending in seed dormancy | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T019588 | scaffolds.min_1000bp | scaffold_3066192 | 47000 | 50047 | + |
Gene detail image
| Genome: |
| CRO_T019588 |
| CDS: |
| CRO_T019588 |
| Transcript: |
| CRO_T019588 |
| Protein: |
| CRO_T019588 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0004672 | protein kinase activity | molecular_function |
| GO:0005524 | ATP binding | molecular_function |
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0009793 | embryo development ending in seed dormancy | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.Other |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF13855.3 | LRR_8 | 61 | 119 | 32.6 |
| PF07714.14 | Pkinase_Tyr | 409 | 578 | 2.7e-22 |
Expression pattern
 | |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| |
| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 29.7044 | |
| SRR122236 | mixed tissue RA CK | 3.103965 | |
| SRR122237 | mixed tissue RB CK | 3.532325 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0.686996 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 9.71296 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 3.10028 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 1.18524 | |
| SRR122242 | callus MeJA 100um 0h | 0.951673 | |
| SRR122246 | callus MeJA 100um 6h | 1.46609 | |
| SRR122240 | callus MeJA 100um 12h | 2.57173 | |
| SRR122241 | callus MeJA 100um 24h | 1.42562 | |
| SRR122239 | flower CK 1 | 16.6055 | |
| SRR1271859 | flower CK 2 | 11.36575 | |
| SRR1144633 | healthy flowers CK | 31.3922 | |
| SRR1144634 | flowers PnWB infected | 46.21995 | |
| SRR122257 | hairy root CK | 21.6322 | |
| SRR122258 | hairy root MeJA 250um CK | 24.6837 | |
| SRR122259 | hairy root MeJA 250um 24h | 24.6995 | |
| SRR122256 | hairy root RebH F CK | 21.1854 | |
| SRR122255 | hairy root TDCi CK | 32.687 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 20.4568 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 20.2064 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 19.546 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 20.7256 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 14.8385 | |
| SRR1820238 | Hairy roots CK GUS 3 | 17.4775 | |
| SRR1820233 | Hairy roots CK GUS 4 | 18.1765 | |
| SRR1820326 | Hairy roots CK GUS 5 | 19.7691 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 14.7044 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 33.5404 | |
| SRR122252 | immature leaf CK | 24.8233 | |
| SRR342023 | leaf CK 1 | 21.94035 | |
| SRR342022 | leaf CK 2 | 31.95935 | |
| SRR342019 | leaf CK 3 | 32.04365 | |
| SRR342017 | leaf CK 4 | 32.4374 | |
| SRR1271857 | leaf CK 5 | 21.7343 | |
| SRR122251 | mature leaf CK | 24.3334 | |
| SRR648705 | root CK 1 | 13.8461 | |
| SRR1271858 | root CK 2 | 10.9986 | |
| SRR122254 | root CK 3 | 18.3675 | |
| SRR648707 | root MeJA 24h | 10.88185 | |
| SRR648709 | root MeJA 24h DSN normalized | 10.7819 | |
| SRR837772 | seedling CK | 33.244 | |
| SRR122243 | sterile seedlings AE CK 1 | 28.4241 | |
| SRR122245 | sterile seedlings AE CK 2 | 16.4494 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 48.4773 | |
| SRR122253 | stem CK | 19.2808 | |
| SRR646572 | shoots CK | 11.24815 | |
| SRR647068 | shoots MeJA 6h 1 | 37.79525 | |
| SRR646596 | shoots MeJA 6h 2 | 31.97275 | |
| SRR646604 | shoots MeJA 24h | 34.1871 | |
| SRR924147 | suspension cells EX ORCA2 CK | 10.07341 | |
| SRR924148 | suspension cells EX ORCA3 CK | 12.0506 |