CRO_T019812's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T019812 | transcription activators |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G35110 | 2.00E-26 | GRL|GNARLED;NAP1|NCK-ASSOCIATED PROTEIN 1 |
| Arabidopsis thaliana | AT2G35110 | 2.00E-26 | GRL|GNARLED;NAP1|NCK-ASSOCIATED PROTEIN 1 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM001723 | nucleus regulation of transcription, DNA-templated organ boundary specification between lateral organs and the meristem ATP-dependent chromatin remodeling regulation of gene expression, epigenetic actin filament organization trichome morphogenesis multidimensional cell growth transcription, DNA-templated retrograde vesicle-mediated transport, Golgi to ER protein-cysteine S-palmitoyltransferase activity threonine-type endopeptidase activity DNA-dependent ATPase activity Proteasome Protein export Regulation of actin cytoskeleton SNARE interactions in vesicular transport proteasome core complex Transcription_related, Transcription regulator: SNF2 Ubiquitin_Proteasome_system, DUB: USP ER to Golgi vesicle-mediated transport positive regulation of transcription, DNA-templated chromatin binding | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T019812 | scaffolds.min_1000bp | scaffold_3038243 | 44 | 5361 | - |
Gene detail image
| Genome: |
| CRO_T019812 |
| CDS: |
| CRO_T019812 |
| Transcript: |
| CRO_T019812 |
| Protein: |
| CRO_T019812 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005634 | nucleus | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0007015 | actin filament organization | biological_process |
| GO:0009825 | multidimensional cell growth | biological_process |
| GO:0010090 | trichome morphogenesis | biological_process |
| GO:0045893 | positive regulation of transcription, DNA-templated | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K05750 | NCKAP1 | - | Regulation of actin cytoskeleton | ko04810 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF09735.6 | Nckap1 | 164 | 385 | 5.9e-60 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 2.259645 | |
| SRR122236 | mixed tissue RA CK | 0.844449 | |
| SRR122237 | mixed tissue RB CK | 0.801394 | |
| SRR122250 | callus YE 0.3mg/ml CK | 14.108 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 8.81923 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 14.2241 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 11.5045 | |
| SRR122242 | callus MeJA 100um 0h | 12.8125 | |
| SRR122246 | callus MeJA 100um 6h | 10.9422 | |
| SRR122240 | callus MeJA 100um 12h | 9.92287 | |
| SRR122241 | callus MeJA 100um 24h | 9.5318 | |
| SRR122239 | flower CK 1 | 6.66106 | |
| SRR1271859 | flower CK 2 | 11.53275 | |
| SRR1144633 | healthy flowers CK | 8.946995 | |
| SRR1144634 | flowers PnWB infected | 6.77865 | |
| SRR122257 | hairy root CK | 6.16601 | |
| SRR122258 | hairy root MeJA 250um CK | 5.9166 | |
| SRR122259 | hairy root MeJA 250um 24h | 5.53326 | |
| SRR122256 | hairy root RebH F CK | 7.26935 | |
| SRR122255 | hairy root TDCi CK | 8.13015 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 7.68279 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 6.23677 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 12.3034 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 11.3914 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 9.64311 | |
| SRR1820238 | Hairy roots CK GUS 3 | 10.6044 | |
| SRR1820233 | Hairy roots CK GUS 4 | 12.4124 | |
| SRR1820326 | Hairy roots CK GUS 5 | 15.77825 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 2.64547 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 3.30062 | |
| SRR122252 | immature leaf CK | 11.1758 | |
| SRR342023 | leaf CK 1 | 12.6413 | |
| SRR342022 | leaf CK 2 | 13.35615 | |
| SRR342019 | leaf CK 3 | 13.25535 | |
| SRR342017 | leaf CK 4 | 11.33805 | |
| SRR1271857 | leaf CK 5 | 14.38545 | |
| SRR122251 | mature leaf CK | 7.94351 | |
| SRR648705 | root CK 1 | 2.105225 | |
| SRR1271858 | root CK 2 | 12.21475 | |
| SRR122254 | root CK 3 | 9.95024 | |
| SRR648707 | root MeJA 24h | 2.63073 | |
| SRR648709 | root MeJA 24h DSN normalized | 3.182595 | |
| SRR837772 | seedling CK | 5.936435 | |
| SRR122243 | sterile seedlings AE CK 1 | 6.98794 | |
| SRR122245 | sterile seedlings AE CK 2 | 9.49251 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 5.76091 | |
| SRR122253 | stem CK | 6.16204 | |
| SRR646572 | shoots CK | 14.44765 | |
| SRR647068 | shoots MeJA 6h 1 | 12.9505 | |
| SRR646596 | shoots MeJA 6h 2 | 13.36915 | |
| SRR646604 | shoots MeJA 24h | 10.62645 | |
| SRR924147 | suspension cells EX ORCA2 CK | 3.095255 | |
| SRR924148 | suspension cells EX ORCA3 CK | 4.548195 |