CRO_T022670's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T022670 | DUF1365 domain containing protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G30130 | 3.00E-109 | unknown protein |
| Arabidopsis thaliana | AT1G30130 | 3.00E-109 | unknown protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000412 | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T022670 | scaffolds.min_1000bp | scaffold_3046860 | 19814 | 24135 | + |
Gene detail image
| Genome: |
| CRO_T022670 |
| CDS: |
| CRO_T022670 |
| Transcript: |
| CRO_T022670 |
| Protein: |
| CRO_T022670 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF07103.8 | DUF1365 | 45 | 261 | 1.5e-39 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 21.82025 | |
| SRR122236 | mixed tissue RA CK | 42.54665 | |
| SRR122237 | mixed tissue RB CK | 43.94045 | |
| SRR122250 | callus YE 0.3mg/ml CK | 5.59105 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 6.97072 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 4.40784 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 4.41188 | |
| SRR122242 | callus MeJA 100um 0h | 3.56655 | |
| SRR122246 | callus MeJA 100um 6h | 10.9772 | |
| SRR122240 | callus MeJA 100um 12h | 9.60978 | |
| SRR122241 | callus MeJA 100um 24h | 7.0761 | |
| SRR122239 | flower CK 1 | 13.0408 | |
| SRR1271859 | flower CK 2 | 22.3465 | |
| SRR1144633 | healthy flowers CK | 24.28295 | |
| SRR1144634 | flowers PnWB infected | 18.73015 | |
| SRR122257 | hairy root CK | 3.16424 | |
| SRR122258 | hairy root MeJA 250um CK | 2.35023 | |
| SRR122259 | hairy root MeJA 250um 24h | 6.31128 | |
| SRR122256 | hairy root RebH F CK | 5.4975 | |
| SRR122255 | hairy root TDCi CK | 5.11654 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 6.22519 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 10.2588 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 5.07804 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 6.73323 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 5.21613 | |
| SRR1820238 | Hairy roots CK GUS 3 | 5.74206 | |
| SRR1820233 | Hairy roots CK GUS 4 | 5.11302 | |
| SRR1820326 | Hairy roots CK GUS 5 | 7.189625 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 4.23732 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 7.45657 | |
| SRR122252 | immature leaf CK | 12.5281 | |
| SRR342023 | leaf CK 1 | 20.7603 | |
| SRR342022 | leaf CK 2 | 13.7493 | |
| SRR342019 | leaf CK 3 | 14.34505 | |
| SRR342017 | leaf CK 4 | 14.40305 | |
| SRR1271857 | leaf CK 5 | 33.74815 | |
| SRR122251 | mature leaf CK | 18.9385 | |
| SRR648705 | root CK 1 | 19.28375 | |
| SRR1271858 | root CK 2 | 11.6132 | |
| SRR122254 | root CK 3 | 11.1888 | |
| SRR648707 | root MeJA 24h | 23.76035 | |
| SRR648709 | root MeJA 24h DSN normalized | 21.355 | |
| SRR837772 | seedling CK | 7.64724 | |
| SRR122243 | sterile seedlings AE CK 1 | 16.8178 | |
| SRR122245 | sterile seedlings AE CK 2 | 20.009 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 14.1594 | |
| SRR122253 | stem CK | 6.90608 | |
| SRR646572 | shoots CK | 23.4961 | |
| SRR647068 | shoots MeJA 6h 1 | 26.8755 | |
| SRR646596 | shoots MeJA 6h 2 | 22.03845 | |
| SRR646604 | shoots MeJA 24h | 22.4265 | |
| SRR924147 | suspension cells EX ORCA2 CK | 22.54115 | |
| SRR924148 | suspension cells EX ORCA3 CK | 20.75105 |