CRO_T023677's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T023677 | DNA binding |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G26330 | 6.00E-46 | DNA binding |
| Arabidopsis thaliana | AT1G26330 | 6.00E-46 | DNA binding |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM002265 | regulation of production of siRNA involved in chromatin silencing by small RNA DNA-directed RNA polymerase V complex mismatch repair complex RNA-directed DNA methylation Mismatch repair mismatched DNA binding protein homodimerization activity | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T023677 | scaffolds.min_1000bp | scaffold_3065069 | 2415 | 11123 | + |
Gene detail image
| Genome: |
| CRO_T023677 |
| CDS: |
| CRO_T023677 |
| Transcript: |
| CRO_T023677 |
| Protein: |
| CRO_T023677 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 1.18049 | |
| SRR122236 | mixed tissue RA CK | 2.107595 | |
| SRR122237 | mixed tissue RB CK | 1.701445 | |
| SRR122250 | callus YE 0.3mg/ml CK | 3.11018 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 4.46054 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 3.27033 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 3.15909 | |
| SRR122242 | callus MeJA 100um 0h | 3.29307 | |
| SRR122246 | callus MeJA 100um 6h | 8.29788 | |
| SRR122240 | callus MeJA 100um 12h | 4.94874 | |
| SRR122241 | callus MeJA 100um 24h | 2.19932 | |
| SRR122239 | flower CK 1 | 1.65939 | |
| SRR1271859 | flower CK 2 | 0.370064 | |
| SRR1144633 | healthy flowers CK | 1.874525 | |
| SRR1144634 | flowers PnWB infected | 1.54889 | |
| SRR122257 | hairy root CK | 3.83038 | |
| SRR122258 | hairy root MeJA 250um CK | 3.35589 | |
| SRR122259 | hairy root MeJA 250um 24h | 2.49052 | |
| SRR122256 | hairy root RebH F CK | 2.61663 | |
| SRR122255 | hairy root TDCi CK | 2.57517 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 3.76904 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 2.82429 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 3.66946 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 4.54041 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 2.85562 | |
| SRR1820238 | Hairy roots CK GUS 3 | 3.95751 | |
| SRR1820233 | Hairy roots CK GUS 4 | 4.11643 | |
| SRR1820326 | Hairy roots CK GUS 5 | 4.143485 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 2.76806 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 3.13014 | |
| SRR122252 | immature leaf CK | 2.4608 | |
| SRR342023 | leaf CK 1 | 3.927095 | |
| SRR342022 | leaf CK 2 | 3.24032 | |
| SRR342019 | leaf CK 3 | 2.7589 | |
| SRR342017 | leaf CK 4 | 2.0377 | |
| SRR1271857 | leaf CK 5 | 0.426251 | |
| SRR122251 | mature leaf CK | 0.799372 | |
| SRR648705 | root CK 1 | 3.91053 | |
| SRR1271858 | root CK 2 | 1.163395 | |
| SRR122254 | root CK 3 | 2.42902 | |
| SRR648707 | root MeJA 24h | 3.302265 | |
| SRR648709 | root MeJA 24h DSN normalized | 3.13645 | |
| SRR837772 | seedling CK | 0.828943 | |
| SRR122243 | sterile seedlings AE CK 1 | 2.0315 | |
| SRR122245 | sterile seedlings AE CK 2 | 3.51514 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 2.3769 | |
| SRR122253 | stem CK | 3.34008 | |
| SRR646572 | shoots CK | 1.379615 | |
| SRR647068 | shoots MeJA 6h 1 | 1.40847 | |
| SRR646596 | shoots MeJA 6h 2 | 1.46137 | |
| SRR646604 | shoots MeJA 24h | 0.6524 | |
| SRR924147 | suspension cells EX ORCA2 CK | 4.877135 | |
| SRR924148 | suspension cells EX ORCA3 CK | 4.948315 |