CRO_T026469's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T026469 | non-intrinsic ABC protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT1G67940 | 2.00E-15 | ABCI17|ATP-binding cassette I17;ATNAP3|non-intrinsic ABC protein 3 |
| Arabidopsis thaliana | AT1G27940 | 2.00E-10 | ABCB13|ATP-binding cassette B13;PGP13|P-glycoprotein 13 |
| Arabidopsis thaliana | AT1G28010 | 0.00000007 | ABCB14|ATP-binding cassette B14;MDR12|multi-drug resistance 12;PGP14|P-glycoprotein 14 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T027025 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TreatCFM001273 | outer membrane-bounded periplasmic space intracellular protoheme IX ABC transporter activity heme-transporting ATPase activity coenzyme A transmembrane transporter activity hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc homogalacturonan degradation coenzyme A transmembrane transport heme transport cytochrome complex assembly tRNA modification hydrolase activity, acting on glycosyl bonds mitochondrial inner membrane | treat preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T026469 | scaffolds.min_1000bp | scaffold_2989234 | 910 | 1599 | + |
Gene detail image
| Genome: |
| CRO_T026469 |
| CDS: |
| CRO_T026469 |
| Transcript: |
| CRO_T026469 |
| Protein: |
| CRO_T026469 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005524 | ATP binding | molecular_function |
| GO:0015439 | heme-transporting ATPase activity | molecular_function |
| GO:0015886 | heme transport | biological_process |
| GO:0017004 | cytochrome complex assembly | biological_process |
| GO:0030288 | outer membrane-bounded periplasmic space | cellular_component |
| GO:0055085 | transmembrane transport | biological_process |
| GO:0103115 | protoheme IX ABC transporter activity | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00005.24 | ABC_tran | 26 | 166 | 1.1e-25 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 34.27345 | |
| SRR122236 | mixed tissue RA CK | 39.7016 | |
| SRR122237 | mixed tissue RB CK | 44.51895 | |
| SRR122250 | callus YE 0.3mg/ml CK | 37.0323 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 34.7882 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 42.4545 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 34.4153 | |
| SRR122242 | callus MeJA 100um 0h | 25.107 | |
| SRR122246 | callus MeJA 100um 6h | 48.3723 | |
| SRR122240 | callus MeJA 100um 12h | 31.5497 | |
| SRR122241 | callus MeJA 100um 24h | 16.2767 | |
| SRR122239 | flower CK 1 | 17.5255 | |
| SRR1271859 | flower CK 2 | 12.04525 | |
| SRR1144633 | healthy flowers CK | 21.2636 | |
| SRR1144634 | flowers PnWB infected | 27.59065 | |
| SRR122257 | hairy root CK | 41.3601 | |
| SRR122258 | hairy root MeJA 250um CK | 47.957 | |
| SRR122259 | hairy root MeJA 250um 24h | 26.0227 | |
| SRR122256 | hairy root RebH F CK | 38.4883 | |
| SRR122255 | hairy root TDCi CK | 40.2207 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 55.0085 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 30.2232 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 37.14 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 30.3236 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 36.0958 | |
| SRR1820238 | Hairy roots CK GUS 3 | 34.9976 | |
| SRR1820233 | Hairy roots CK GUS 4 | 35.5772 | |
| SRR1820326 | Hairy roots CK GUS 5 | 44.47195 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 54.7372 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 35.2068 | |
| SRR122252 | immature leaf CK | 36.5665 | |
| SRR342023 | leaf CK 1 | 37.1556 | |
| SRR342022 | leaf CK 2 | 37.0887 | |
| SRR342019 | leaf CK 3 | 36.891 | |
| SRR342017 | leaf CK 4 | 39.07075 | |
| SRR1271857 | leaf CK 5 | 23.64855 | |
| SRR122251 | mature leaf CK | 33.726 | |
| SRR648705 | root CK 1 | 76.98555 | |
| SRR1271858 | root CK 2 | 37.466 | |
| SRR122254 | root CK 3 | 26.9616 | |
| SRR648707 | root MeJA 24h | 54.9442 | |
| SRR648709 | root MeJA 24h DSN normalized | 64.2641 | |
| SRR837772 | seedling CK | 15.4054 | |
| SRR122243 | sterile seedlings AE CK 1 | 40.3701 | |
| SRR122245 | sterile seedlings AE CK 2 | 36.2862 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 33.5845 | |
| SRR122253 | stem CK | 30.0959 | |
| SRR646572 | shoots CK | 33.6537 | |
| SRR647068 | shoots MeJA 6h 1 | 26.4229 | |
| SRR646596 | shoots MeJA 6h 2 | 34.153 | |
| SRR646604 | shoots MeJA 24h | 17.56115 | |
| SRR924147 | suspension cells EX ORCA2 CK | 61.4688 | |
| SRR924148 | suspension cells EX ORCA3 CK | 65.03125 |