Gene detail

CRO_T027314's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T027314	NADH dehydrogenase subunit

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	ATMG00070	5.00E-65	NAD9\|NADH dehydrogenase subunit 9

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	Null
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
TissueCFM000539	cellular respiration mitochondrial respiratory chain complex I cobalt ion binding Transcription_related, Transcription factor: ERF	tissue preferential network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T027314	scaffolds.min_1000bp	scaffold_3061014	48244	48757	-

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T027314
ATGGAAAGATTGGAACATGGGGATAGATCTGATACCAATACGAACTACCTATTTCAATTGTTGTGCTTTCTTAAATTGTATACCTATACAAGGGTTCAAGTTTCGATCGATATTTGCGGAGTTGATTATCCCTCTCGAAAACGAAGATTTGAAGTAGTCTATAATTTACTGAGTACTCGGTATAACTCACGCATTCGTGTGCAAGCCTATGCTGACGAAGTAACACGAATATCTCTGGTAGTAAGTCTATTTCCATCAGCAGCTAACTGGTAGGAACGCGAAGTTTGGGATATGTTTGGTGTTTCCTCCATCAATTATTTGGATCTACGACGTATATCAACAAATTATGATTTTCGAGGGTCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTTGATTTTCCTAGTCATTGGGAACAGCGAAGCAATGGATAA
CDS:
CRO_T027314
ATGGAAAGATTGGAACATGGGGATAGATCTGATACCAATACGAACTACCTATTTCAATTGTTGTGCTTTCTTAAATTGTATACCTATACAAGGGTTCAAGTTTCGATCGATATTTGCGGAGTTGATTATCCCTCTCGAAAACGAAGATTTGAAGTAGTCTATAATTTACTGAGTACTCGGTATAACTCACGCATTCGTGTGCAAGCCTATGCTGACGAAGTAACACGAATATCTCTGGTACTAACTGGTAGGAACGCGAAGTTTGGGATATGTTTGGTGTTTCCTCCATCAATTATTTGGATCTACGACGTATATCAACAAATTATGATTTTCGAGGGTCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTTGATTTTCCTAGTCATTGGGAACAGCGAAGCAATGGATAA
Transcript:
CRO_T027314
ATGGAAAGATTGGAACATGGGGATAGATCTGATACCAATACGAACTACCTATTTCAATTGTTGTGCTTTCTTAAATTGTATACCTATACAAGGGTTCAAGTTTCGATCGATATTTGCGGAGTTGATTATCCCTCTCGAAAACGAAGATTTGAAGTAGTCTATAATTTACTGAGTACTCGGTATAACTCACGCATTCGTGTGCAAGCCTATGCTGACGAAGTAACACGAATATCTCTGGTACTAACTGGTAGGAACGCGAAGTTTGGGATATGTTTGGTGTTTCCTCCATCAATTATTTGGATCTACGACGTATATCAACAAATTATGATTTTCGAGGGTCATCCATTACGAAAAGACCTTCCTCTGAGTGGATATGTGGAAGTACGCTATGATGATCCAGAGAAACGTGTGGTTTCTGAACCCATTGAGATGACCCAAGAATTTCGCTATTTTGATTTTCCTAGTCATTGGGAACAGCGAAGCAATGGATAA
Protein:
CRO_T027314
MERLEHGDRSDTNTNYLFQLLCFLKLYTYTRVQVSIDICGVDYPSRKRRFEVVYNLLSTRYNSRIRVQAYADEVTRISLVLTGRNAKFGICLVFPPSIIWIYDVYQQIMIFEGHPLRKDLPLSGYVEVRYDDPEKRVVSEPIEMTQEFRYFDFPSHWEQRSNG*

Gene Ontology

GO term	Description	Category
GO:0005747	mitochondrial respiratory chain complex I	cellular_component
GO:0005886	plasma membrane	cellular_component
GO:0008137	NADH dehydrogenase (ubiquinone) activity	molecular_function
GO:0008270	zinc ion binding	molecular_function
GO:0045333	cellular respiration	biological_process
GO:0050897	cobalt ion binding	molecular_function

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
K03936	NDUFS3	EC:1.6.5.3 EC:1.6.99.3	Oxidative phosphorylation	ko00190

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00329.16	Complex1_30kDa	17	125	1.1e-07

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	2.95408
SRR122236	mixed tissue RA CK	5.72381
SRR122237	mixed tissue RB CK	5.746135
SRR122250	callus YE 0.3mg/ml CK	1.94816
SRR122247	callus YE 0.3mg/ml 6h	0.377827
SRR122248	callus YE 0.3mg/ml 12h	2.50475
SRR122249	callus YE 0.3mg/ml 24h	0.201865
SRR122242	callus MeJA 100um 0h	0.571157
SRR122246	callus MeJA 100um 6h	5.58629
SRR122240	callus MeJA 100um 12h	1.1232
SRR122241	callus MeJA 100um 24h	0.89838
SRR122239	flower CK 1	0.61464
SRR1271859	flower CK 2	0.3777583
SRR1144633	healthy flowers CK	2.436005
SRR1144634	flowers PnWB infected	3.480475
SRR122257	hairy root CK	0.19558
SRR122258	hairy root MeJA 250um CK	0.295721
SRR122259	hairy root MeJA 250um 24h	2.98686
SRR122256	hairy root RebH F CK	1.84461
SRR122255	hairy root TDCi CK	1.09916
SRR122260	hairy root TDCi MeJA 250um CK	0
SRR122261	hairy root TDCi MeJA 250um 24h	0
SRR1820161	Hairy roots CK BAI1 14	12.0547
SRR1820157	Hairy roots CK BAI1 18	24.3104
SRR1820149	Hairy roots CK BAI1 19	11.7868
SRR1820238	Hairy roots CK GUS 3	9.30661
SRR1820233	Hairy roots CK GUS 4	14.1891
SRR1820326	Hairy roots CK GUS 5	6.194275
SRR2098821	hairy roots OE AS CK rep1	7.07139
SRR2099440	hairy roots OE AS CK rep2	3.00957
SRR122252	immature leaf CK	0
SRR342023	leaf CK 1	0
SRR342022	leaf CK 2	0.229079
SRR342019	leaf CK 3	0.3826315
SRR342017	leaf CK 4	0.1026205
SRR1271857	leaf CK 5	0
SRR122251	mature leaf CK	0.485257
SRR648705	root CK 1	13.30735
SRR1271858	root CK 2	0.060395
SRR122254	root CK 3	1.57051
SRR648707	root MeJA 24h	6.40753
SRR648709	root MeJA 24h DSN normalized	11.2521
SRR837772	seedling CK	0.584836
SRR122243	sterile seedlings AE CK 1	0.51226
SRR122245	sterile seedlings AE CK 2	0.462764
SRR122244	sterile seedlings AF MeJA 6um 12d	0.316733
SRR122253	stem CK	0.615976
SRR646572	shoots CK	0.7245775
SRR647068	shoots MeJA 6h 1	0.974315
SRR646596	shoots MeJA 6h 2	0.974978
SRR646604	shoots MeJA 24h	0.7516405
SRR924147	suspension cells EX ORCA2 CK	23.5087
SRR924148	suspension cells EX ORCA3 CK	11.77865

TOP