CRO_T027462's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T027462 | arabinogalactan protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | - | - |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T020468 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000747 | outer membrane-bounded periplasmic space Mismatch repair phosphatidate metabolism, as a signaling molecule adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 cytochrome complex assembly cellulose catabolic process hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc cellulase activity ATPase activity Protein processing in endoplasmic reticulum transport transporter activity phosphorylation kinase activity | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T027462 | scaffolds.min_1000bp | scaffold_3062744 | 1910 | 3795 | + |
Gene detail image
| Genome: |
| CRO_T027462 |
| CDS: |
| CRO_T027462 |
| Transcript: |
| CRO_T027462 |
| Protein: |
| CRO_T027462 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| -- | -- | -- |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 418.403 | |
| SRR122236 | mixed tissue RA CK | 16.3959 | |
| SRR122237 | mixed tissue RB CK | 14.8728 | |
| SRR122250 | callus YE 0.3mg/ml CK | 4.40717 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 12.0668 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 6.79957 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 6.28586 | |
| SRR122242 | callus MeJA 100um 0h | 7.86653 | |
| SRR122246 | callus MeJA 100um 6h | 40.5714 | |
| SRR122240 | callus MeJA 100um 12h | 29.9788 | |
| SRR122241 | callus MeJA 100um 24h | 10.4008 | |
| SRR122239 | flower CK 1 | 707.414 | |
| SRR1271859 | flower CK 2 | 349.541 | |
| SRR1144633 | healthy flowers CK | 328.7025 | |
| SRR1144634 | flowers PnWB infected | 461.5965 | |
| SRR122257 | hairy root CK | 191.293 | |
| SRR122258 | hairy root MeJA 250um CK | 361.371 | |
| SRR122259 | hairy root MeJA 250um 24h | 103.606 | |
| SRR122256 | hairy root RebH F CK | 166.242 | |
| SRR122255 | hairy root TDCi CK | 288.733 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 397.508 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 68.5928 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 125.778 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 109.91 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 65.2294 | |
| SRR1820238 | Hairy roots CK GUS 3 | 42.4499 | |
| SRR1820233 | Hairy roots CK GUS 4 | 57.083 | |
| SRR1820326 | Hairy roots CK GUS 5 | 71.14675 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 40.9467 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 328.22 | |
| SRR122252 | immature leaf CK | 443.421 | |
| SRR342023 | leaf CK 1 | 403.646 | |
| SRR342022 | leaf CK 2 | 293.722 | |
| SRR342019 | leaf CK 3 | 297.9985 | |
| SRR342017 | leaf CK 4 | 346.959 | |
| SRR1271857 | leaf CK 5 | 58.9458 | |
| SRR122251 | mature leaf CK | 370.398 | |
| SRR648705 | root CK 1 | 661.374 | |
| SRR1271858 | root CK 2 | 317.301 | |
| SRR122254 | root CK 3 | 416.373 | |
| SRR648707 | root MeJA 24h | 449.5385 | |
| SRR648709 | root MeJA 24h DSN normalized | 386.6655 | |
| SRR837772 | seedling CK | 386.9365 | |
| SRR122243 | sterile seedlings AE CK 1 | 419.571 | |
| SRR122245 | sterile seedlings AE CK 2 | 465.614 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 260.856 | |
| SRR122253 | stem CK | 132.36 | |
| SRR646572 | shoots CK | 102.6227 | |
| SRR647068 | shoots MeJA 6h 1 | 73.8469 | |
| SRR646596 | shoots MeJA 6h 2 | 61.35265 | |
| SRR646604 | shoots MeJA 24h | 66.24245 | |
| SRR924147 | suspension cells EX ORCA2 CK | 352.8975 | |
| SRR924148 | suspension cells EX ORCA3 CK | 514.4985 |