CRO_T029955's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T029955 | Vacuolar sorting protein 9 (VPS9) domain |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT3G19770 | 3.00E-19 | ATVPS9A|VACUOLAR PROTEIN SORTING 9A |
| Arabidopsis thaliana | AT3G19770 | 3.00E-19 | ATVPS9A|VACUOLAR PROTEIN SORTING 9A |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| CFinderADM000829 | Protein_kinases_phosphatases, PPC:1.6.3: Receptor Like Cytoplasmic Kinase V cytosolic proteasome complex nuclear proteasome complex positive regulation of proteasomal protein catabolic process positive regulation of RNA polymerase II transcriptional preinitiation complex assembly proteasome regulatory particle, base subcomplex ER-associated ubiquitin-dependent protein catabolic process activation of MAPKK activity peptidyl-tyrosine dephosphorylation Proteasome TBP-class protein binding proteasome-activating ATPase activity MAP kinase kinase kinase activity protein tyrosine phosphatase activity Transcription_related, Transcription factor: C2C2-GATA ATP binding MAPK cascade Protein_kinases_phosphatases, PPC:1.9.2: S Domain Kinase (Type 2) formation of glycosidic bonds, GlycosylTransferases: GTnc intracellular part peptidase activity cellular process Golgi apparatus sequence-specific DNA binding adhesion to carbohydrates, Carbohydrate-Binding Modules: CBM57 intracellular | global network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T029955 | scaffolds.min_1000bp | scaffold_2970092 | 2721 | 4939 | + |
Gene detail image
| Genome: |
| CRO_T029955 |
| CDS: |
| CRO_T029955 |
| Transcript: |
| CRO_T029955 |
| Protein: |
| CRO_T029955 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0016021 | integral component of membrane | cellular_component |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 2.401805 | |
| SRR122236 | mixed tissue RA CK | 12.9031 | |
| SRR122237 | mixed tissue RB CK | 13.0713 | |
| SRR122250 | callus YE 0.3mg/ml CK | 48.6327 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 28.8616 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 38.7168 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 39.5481 | |
| SRR122242 | callus MeJA 100um 0h | 51.8423 | |
| SRR122246 | callus MeJA 100um 6h | 32.439 | |
| SRR122240 | callus MeJA 100um 12h | 34.6082 | |
| SRR122241 | callus MeJA 100um 24h | 33.1018 | |
| SRR122239 | flower CK 1 | 10.7712 | |
| SRR1271859 | flower CK 2 | 12.82605 | |
| SRR1144633 | healthy flowers CK | 9.740135 | |
| SRR1144634 | flowers PnWB infected | 4.80234 | |
| SRR122257 | hairy root CK | 9.49129 | |
| SRR122258 | hairy root MeJA 250um CK | 12.225 | |
| SRR122259 | hairy root MeJA 250um 24h | 14.9125 | |
| SRR122256 | hairy root RebH F CK | 8.28863 | |
| SRR122255 | hairy root TDCi CK | 12.6438 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 11.8261 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 14.9913 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 32.0715 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 30.6263 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 26.1672 | |
| SRR1820238 | Hairy roots CK GUS 3 | 27.1058 | |
| SRR1820233 | Hairy roots CK GUS 4 | 28.6047 | |
| SRR1820326 | Hairy roots CK GUS 5 | 29.01905 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 18.6715 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 10.7227 | |
| SRR122252 | immature leaf CK | 6.07914 | |
| SRR342023 | leaf CK 1 | 4.927575 | |
| SRR342022 | leaf CK 2 | 7.277815 | |
| SRR342019 | leaf CK 3 | 5.36306 | |
| SRR342017 | leaf CK 4 | 5.66959 | |
| SRR1271857 | leaf CK 5 | 12.1701 | |
| SRR122251 | mature leaf CK | 14.8272 | |
| SRR648705 | root CK 1 | 25.37025 | |
| SRR1271858 | root CK 2 | 19.50245 | |
| SRR122254 | root CK 3 | 16.9367 | |
| SRR648707 | root MeJA 24h | 28.9432 | |
| SRR648709 | root MeJA 24h DSN normalized | 21.2797 | |
| SRR837772 | seedling CK | 13.7498 | |
| SRR122243 | sterile seedlings AE CK 1 | 10.1279 | |
| SRR122245 | sterile seedlings AE CK 2 | 13.5854 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 13.0936 | |
| SRR122253 | stem CK | 8.58031 | |
| SRR646572 | shoots CK | 18.7522 | |
| SRR647068 | shoots MeJA 6h 1 | 14.6654 | |
| SRR646596 | shoots MeJA 6h 2 | 11.93275 | |
| SRR646604 | shoots MeJA 24h | 11.8347 | |
| SRR924147 | suspension cells EX ORCA2 CK | 27.3278 | |
| SRR924148 | suspension cells EX ORCA3 CK | 29.19175 |