CRO_T030222's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T030222 | AGAMOUS-like |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G37940 | 1.00E-25 | AGL21|AGAMOUS-like 21 |
| Arabidopsis thaliana | AT3G57230 | 5.00E-22 | AGL16|AGAMOUS-like 16 |
| Arabidopsis thaliana | AT4G24540 | 5.00E-22 | AGL24|AGAMOUS-like 24 |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T030043 CRO_T026655 CRO_T007436 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000343 | BLOC-1 complex Protein_kinases_phosphatases, PPC:1.9.1: CRPK1 Like Kinase (Types 1 and 2) Transcription_related, Transcription factor: MIKC NF-kappa B signaling pathway | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T030222 | scaffolds.min_1000bp | scaffold_3039058 | 19468 | 22272 | + |
Gene detail image
| Genome: |
| CRO_T030222 |
| CDS: |
| CRO_T030222 |
| Transcript: |
| CRO_T030222 |
| Protein: |
| CRO_T030222 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | transcription factor activity, sequence-specific DNA binding | molecular_function |
| GO:0005634 | nucleus | cellular_component |
| GO:0006351 | transcription, DNA-templated | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0010228 | vegetative to reproductive phase transition of meristem | biological_process |
| GO:0032440 | 2-alkenal reductase [NAD(P)] activity | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| GO:0048364 | root development | biological_process |
| GO:0055114 | oxidation-reduction process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MIKC |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.15 | SRF-TF | 10 | 56 | 1.8e-23 |
| PF01486.14 | K-box | 88 | 174 | 4.4e-21 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 0.5239445 | |
| SRR122236 | mixed tissue RA CK | 7.270565 | |
| SRR122237 | mixed tissue RB CK | 8.78479 | |
| SRR122250 | callus YE 0.3mg/ml CK | 0.0872568 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 0 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 0 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 0 | |
| SRR122242 | callus MeJA 100um 0h | 0.115118 | |
| SRR122246 | callus MeJA 100um 6h | 0 | |
| SRR122240 | callus MeJA 100um 12h | 0.0646812 | |
| SRR122241 | callus MeJA 100um 24h | 0.0905353 | |
| SRR122239 | flower CK 1 | 0.247764 | |
| SRR1271859 | flower CK 2 | 1.74412 | |
| SRR1144633 | healthy flowers CK | 1.9222 | |
| SRR1144634 | flowers PnWB infected | 1.119375 | |
| SRR122257 | hairy root CK | 23.0999 | |
| SRR122258 | hairy root MeJA 250um CK | 21.2187 | |
| SRR122259 | hairy root MeJA 250um 24h | 11.3713 | |
| SRR122256 | hairy root RebH F CK | 2.97429 | |
| SRR122255 | hairy root TDCi CK | 20.1157 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 22.8883 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 9.07788 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 6.60115 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 1.34876 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 7.7557 | |
| SRR1820238 | Hairy roots CK GUS 3 | 3.81356 | |
| SRR1820233 | Hairy roots CK GUS 4 | 2.31222 | |
| SRR1820326 | Hairy roots CK GUS 5 | 5.53019 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 3.09568 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 15.9427 | |
| SRR122252 | immature leaf CK | 0.20451 | |
| SRR342023 | leaf CK 1 | 0 | |
| SRR342022 | leaf CK 2 | 0 | |
| SRR342019 | leaf CK 3 | 0.224368 | |
| SRR342017 | leaf CK 4 | 0.163604 | |
| SRR1271857 | leaf CK 5 | 0.9938725 | |
| SRR122251 | mature leaf CK | 0.293414 | |
| SRR648705 | root CK 1 | 0.0738708 | |
| SRR1271858 | root CK 2 | 15.2218 | |
| SRR122254 | root CK 3 | 6.77395 | |
| SRR648707 | root MeJA 24h | 0 | |
| SRR648709 | root MeJA 24h DSN normalized | 0 | |
| SRR837772 | seedling CK | 2.831405 | |
| SRR122243 | sterile seedlings AE CK 1 | 6.126 | |
| SRR122245 | sterile seedlings AE CK 2 | 6.65335 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 7.8521 | |
| SRR122253 | stem CK | 13.905 | |
| SRR646572 | shoots CK | 1.560015 | |
| SRR647068 | shoots MeJA 6h 1 | 1.73966 | |
| SRR646596 | shoots MeJA 6h 2 | 1.344375 | |
| SRR646604 | shoots MeJA 24h | 2.5534 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0.07654075 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0 |