CRO_T030252's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T030252 | Plant invertase/pectin methylesterase inhibitor superfamily |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT2G45220 | 0 | PME17|pectin methylesterase 17 |
| Arabidopsis thaliana | AT5G51490 | 4.00E-141 | Plant invertase/pectin methylesterase inhibitor superfamily |
| Arabidopsis thaliana | AT3G47400 | 1.00E-138 | Plant invertase/pectin methylesterase inhibitor superfamily |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | CRO_T002414 CRO_T003260 | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000072 | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T030252 | scaffolds.min_1000bp | scaffold_2957712 | 4363 | 6948 | - |
Gene detail image
| Genome: |
| CRO_T030252 |
| CDS: |
| CRO_T030252 |
| Transcript: |
| CRO_T030252 |
| Protein: |
| CRO_T030252 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0005576 | extracellular region | cellular_component |
| GO:0005618 | cell wall | cellular_component |
| GO:0030599 | pectinesterase activity | molecular_function |
| GO:0042545 | cell wall modification | biological_process |
| GO:0043086 | negative regulation of catalytic activity | biological_process |
| GO:0045330 | aspartyl esterase activity | molecular_function |
| GO:0045490 | pectin catabolic process | biological_process |
| GO:0046910 | pectinesterase inhibitor activity | molecular_function |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | ko00040 |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04043.12 | PMEI | 40 | 182 | 2.6e-25 |
| PF01095.16 | Pectinesterase | 218 | 515 | 1.2e-141 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 0 | |
| SRR122236 | mixed tissue RA CK | 7.232285 | |
| SRR122237 | mixed tissue RB CK | 6.67258 | |
| SRR122250 | callus YE 0.3mg/ml CK | 9.08989 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 8.75727 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 7.64959 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 6.38523 | |
| SRR122242 | callus MeJA 100um 0h | 18.5855 | |
| SRR122246 | callus MeJA 100um 6h | 14.8813 | |
| SRR122240 | callus MeJA 100um 12h | 14.643 | |
| SRR122241 | callus MeJA 100um 24h | 25.1505 | |
| SRR122239 | flower CK 1 | 17.9892 | |
| SRR1271859 | flower CK 2 | 0.2238505 | |
| SRR1144633 | healthy flowers CK | 0.539121 | |
| SRR1144634 | flowers PnWB infected | 0.0771546 | |
| SRR122257 | hairy root CK | 6.32862 | |
| SRR122258 | hairy root MeJA 250um CK | 7.31115 | |
| SRR122259 | hairy root MeJA 250um 24h | 4.1628 | |
| SRR122256 | hairy root RebH F CK | 7.37723 | |
| SRR122255 | hairy root TDCi CK | 6.99351 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 23.1246 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 31.9927 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 1.42691 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 2.02464 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 5.88103 | |
| SRR1820238 | Hairy roots CK GUS 3 | 19.956 | |
| SRR1820233 | Hairy roots CK GUS 4 | 5.35513 | |
| SRR1820326 | Hairy roots CK GUS 5 | 7.676145 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 22.2718 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 3.23934 | |
| SRR122252 | immature leaf CK | 0 | |
| SRR342023 | leaf CK 1 | 0.04251835 | |
| SRR342022 | leaf CK 2 | 0.1198125 | |
| SRR342019 | leaf CK 3 | 0 | |
| SRR342017 | leaf CK 4 | 0.09085355 | |
| SRR1271857 | leaf CK 5 | 0 | |
| SRR122251 | mature leaf CK | 0 | |
| SRR648705 | root CK 1 | 0 | |
| SRR1271858 | root CK 2 | 2.76726 | |
| SRR122254 | root CK 3 | 0.37115 | |
| SRR648707 | root MeJA 24h | 0 | |
| SRR648709 | root MeJA 24h DSN normalized | 0 | |
| SRR837772 | seedling CK | 0.4327875 | |
| SRR122243 | sterile seedlings AE CK 1 | 13.9684 | |
| SRR122245 | sterile seedlings AE CK 2 | 12.8992 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 17.4462 | |
| SRR122253 | stem CK | 7.27851 | |
| SRR646572 | shoots CK | 1.010413 | |
| SRR647068 | shoots MeJA 6h 1 | 3.84118 | |
| SRR646596 | shoots MeJA 6h 2 | 3.95976 | |
| SRR646604 | shoots MeJA 24h | 8.70064 | |
| SRR924147 | suspension cells EX ORCA2 CK | 0.0848722 | |
| SRR924148 | suspension cells EX ORCA3 CK | 0.1348105 |