Gene detail

CRO_T031165's detailed information

Annotation (DRYAD)

Gene ID	Functional Annotation
CRO_T031165	related to ABI3/VP1

Blast top3 hits

Species	Gene ID	E-value	Annotation
Arabidopsis thaliana	AT2G30470	2.00E-14	HSI2\|high-level expression of sugar-inducible gene 2;VAL1\|VP1/ABI3-LIKE 1
Arabidopsis thaliana	AT4G32010	3.00E-13	HSL1\|HSI2-like 1;VAL2\|VP1/ABI3-LIKE 2
Arabidopsis thaliana	AT4G21550	4.00E-12	VAL3\|VP1/ABI3-like 3

Network

Network Category	Global Network	Tissue Preferential Network	Treat Response Network
Coexpression Positive	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
Coexpression Negative	Top300 PCC Genelist	Top300 PCC Genelist	Top300 PCC Genelist
PPI Relationship	CRO_T019880 CRO_T005485 CRO_T022238 CRO_T000810
miRNA-Target Relationship	Null

Functional module

Module ID	Function Annotation	Category
CFinderADM001705	Transcription_related, Transcription factor: RAV transcription, DNA-templated regulation of transcription, DNA-templated response to ethylene DNA binding response to stimulus Transcription_related, Transcription factor: MYB-related Ubiquitin_Proteasome_system, DUB: OTU nucleus Ubiquitin_Proteasome_system, E3 adaptor: F-box transcription factor activity, sequence-specific DNA binding	global network

Location

Gene	Assembly	Scaffold	Start	End	Strand
CRO_T031165	scaffolds.min_1000bp	scaffold_3068140	22434	23522	+

Gene detail image

more details in UCSC

Sequences

Genome:
CRO_T031165
ATGGATGCAGGAAGTTGCATAGATGAGACCACTACTAGTGACACAATTTCGACTGCACCAACATCGCTATCAACTCTACCGGTGGCTAAGTCACCGGAGATCAGCCTCTGCCGCGTCGGAAGTGGAGCCAGCGTGATTTTAGATTCAGAAGGCGGCGTTGAAGCCGAATCTCGGAAACTGCCATCTTCCAGATTCAAAGGAGTAGTTCCTCAGCCTAATGGGCGATGGGGAGCTCAAATTTATGAAAAACATCAAAGAGTTTGGTTAGGTACTTTCAATGAAGAAGATGAAGCGGCTAGGGCTTACGATATAGCGGCGCAACGATTCCGCGGCCGCGACGCCGTAACTAATTTCAAACCATTATCGGAAATTTCTGAAGAAGACGACATCGAATCAGCCTTTTTGAATTCTCATTCTAAGGCTGAAATTGTTGATATGCTTCGAAAACATACTTACAATGACGAATTGGAACAAAGCAAGAGGAATTTCGGCCTAAATGGTGGTAATTTTAATAAAGGAATTAAAGATGGATTTTCGAATCCTAATAATTCGGGTTTAGGTAAAACACTGAAAGCTCGTGAACAGCTTTTTGAGAAATCGGTTACGCCGAGTGACGTCGGCAAATTAAACCGACTTGTTATTCCTAAACAACACGCGGAAAAACATTTCCCTTTGCAAAGTGGAAATACTTCAAAAGGGGTTTTATTGAATTTTGAAGATATGAGCGGAAAAGTATGGCGATTCCGTTATTCTTACTGGAATAGTAGCCAAAGCTATGTTTTAACAAAAGGTTGGAGCAGATTTGTGAAGGAAAAGAATTTGAAAGCCGGCGACATTGTTAGTTTTCAGAGATCAACAGGAATCGATAAGCAACTTTACATTGATTGGAAACCCAGAAACACCGCTGCCGCCATAGCCGCCCCGATTCAGCCTGTTCAGACGGTGAGATTATTTGGAGTTAATATTGTTAGTAACGTTGTTGTTGTTGATAATACTAATATAACTTGCAGTACTGGAAAACGAGTTAGAGAAATTGAGTTCTTGGCATTTGATTGCAGCAAGAAACCAAGAATTATTGATGCCTTGTAA
CDS:
CRO_T031165
ATGGATGCAGGAAGTTGCATAGATGAGACCACTACTAGTGACACAATTTCGACTGCACCAACATCGCTATCAACTCTACCGGTGGCTAAGTCACCGGAGATCAGCCTCTGCCGCGTCGGAAGTGGAGCCAGCGTGATTTTAGATTCAGAAGGCGGCGTTGAAGCCGAATCTCGGAAACTGCCATCTTCCAGATTCAAAGGAGTAGTTCCTCAGCCTAATGGGCGATGGGGAGCTCAAATTTATGAAAAACATCAAAGAGTTTGGTTAGGTACTTTCAATGAAGAAGATGAAGCGGCTAGGGCTTACGATATAGCGGCGCAACGATTCCGCGGCCGCGACGCCGTAACTAATTTCAAACCATTATCGGAAATTTCTGAAGAAGACGACATCGAATCAGCCTTTTTGAATTCTCATTCTAAGGCTGAAATTGTTGATATGCTTCGAAAACATACTTACAATGACGAATTGGAACAAAGCAAGAGGAATTTCGGCCTAAATGGTGGTAATTTTAATAAAGGAATTAAAGATGGATTTTCGAATCCTAATAATTCGGGTTTAGGTAAAACACTGAAAGCTCGTGAACAGCTTTTTGAGAAATCGGTTACGCCGAGTGACGTCGGCAAATTAAACCGACTTGTTATTCCTAAACAACACGCGGAAAAACATTTCCCTTTGCAAAGTGGAAATACTTCAAAAGGGGTTTTATTGAATTTTGAAGATATGAGCGGAAAAGTATGGCGATTCCGTTATTCTTACTGGAATAGTAGCCAAAGCTATGTTTTAACAAAAGGTTGGAGCAGATTTGTGAAGGAAAAGAATTTGAAAGCCGGCGACATTGTTAGTTTTCAGAGATCAACAGGAATCGATAAGCAACTTTACATTGATTGGAAACCCAGAAACACCGCTGCCGCCATAGCCGCCCCGATTCAGCCTGTTCAGACGGTGAGATTATTTGGAGTTAATATTGTTAGTAACGTTGTTGTTGTTGATAATACTAATATAACTTGCAGTACTGGAAAACGAGTTAGAGAAATTGAGTTCTTGGCATTTGATTGCAGCAAGAAACCAAGAATTATTGATGCCTTGTAA
Transcript:
CRO_T031165
ATGGATGCAGGAAGTTGCATAGATGAGACCACTACTAGTGACACAATTTCGACTGCACCAACATCGCTATCAACTCTACCGGTGGCTAAGTCACCGGAGATCAGCCTCTGCCGCGTCGGAAGTGGAGCCAGCGTGATTTTAGATTCAGAAGGCGGCGTTGAAGCCGAATCTCGGAAACTGCCATCTTCCAGATTCAAAGGAGTAGTTCCTCAGCCTAATGGGCGATGGGGAGCTCAAATTTATGAAAAACATCAAAGAGTTTGGTTAGGTACTTTCAATGAAGAAGATGAAGCGGCTAGGGCTTACGATATAGCGGCGCAACGATTCCGCGGCCGCGACGCCGTAACTAATTTCAAACCATTATCGGAAATTTCTGAAGAAGACGACATCGAATCAGCCTTTTTGAATTCTCATTCTAAGGCTGAAATTGTTGATATGCTTCGAAAACATACTTACAATGACGAATTGGAACAAAGCAAGAGGAATTTCGGCCTAAATGGTGGTAATTTTAATAAAGGAATTAAAGATGGATTTTCGAATCCTAATAATTCGGGTTTAGGTAAAACACTGAAAGCTCGTGAACAGCTTTTTGAGAAATCGGTTACGCCGAGTGACGTCGGCAAATTAAACCGACTTGTTATTCCTAAACAACACGCGGAAAAACATTTCCCTTTGCAAAGTGGAAATACTTCAAAAGGGGTTTTATTGAATTTTGAAGATATGAGCGGAAAAGTATGGCGATTCCGTTATTCTTACTGGAATAGTAGCCAAAGCTATGTTTTAACAAAAGGTTGGAGCAGATTTGTGAAGGAAAAGAATTTGAAAGCCGGCGACATTGTTAGTTTTCAGAGATCAACAGGAATCGATAAGCAACTTTACATTGATTGGAAACCCAGAAACACCGCTGCCGCCATAGCCGCCCCGATTCAGCCTGTTCAGACGGTGAGATTATTTGGAGTTAATATTGTTAGTAACGTTGTTGTTGTTGATAATACTAATATAACTTGCAGTACTGGAAAACGAGTTAGAGAAATTGAGTTCTTGGCATTTGATTGCAGCAAGAAACCAAGAATTATTGATGCCTTGTAA
Protein:
CRO_T031165
MDAGSCIDETTTSDTISTAPTSLSTLPVAKSPEISLCRVGSGASVILDSEGGVEAESRKLPSSRFKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGRDAVTNFKPLSEISEEDDIESAFLNSHSKAEIVDMLRKHTYNDELEQSKRNFGLNGGNFNKGIKDGFSNPNNSGLGKTLKAREQLFEKSVTPSDVGKLNRLVIPKQHAEKHFPLQSGNTSKGVLLNFEDMSGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGIDKQLYIDWKPRNTAAAIAAPIQPVQTVRLFGVNIVSNVVVVDNTNITCSTGKRVREIEFLAFDCSKKPRIIDAL*

Gene Ontology

GO term	Description	Category
GO:0003677	DNA binding	molecular_function
GO:0003700	transcription factor activity, sequence-specific DNA binding	molecular_function
GO:0005634	nucleus	cellular_component
GO:0006351	transcription, DNA-templated	biological_process
GO:0006355	regulation of transcription, DNA-templated	biological_process

Gene family

Gene family	subfamily
Transcription Factors Family	RAV

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Pathway ID
--	--	--	--	--

PlantCyC

Gene	Enzyme ID	Description	Pathway	Pathway id
--	--	--	--	--

Pfam domain

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00847.17	AP2	63	111	3.3e-08
PF02362.18	B3	197	296	2.4e-29

Expression pattern

SRA Experiment	Description	FPKM
ERR364390	mixed tissue CK	32.2076
SRR122236	mixed tissue RA CK	231.0445
SRR122237	mixed tissue RB CK	230.8515
SRR122250	callus YE 0.3mg/ml CK	280.071
SRR122247	callus YE 0.3mg/ml 6h	241.835
SRR122248	callus YE 0.3mg/ml 12h	253.643
SRR122249	callus YE 0.3mg/ml 24h	305.837
SRR122242	callus MeJA 100um 0h	381.068
SRR122246	callus MeJA 100um 6h	99.7551
SRR122240	callus MeJA 100um 12h	117.435
SRR122241	callus MeJA 100um 24h	495.257
SRR122239	flower CK 1	27.6131
SRR1271859	flower CK 2	36.20385
SRR1144633	healthy flowers CK	53.3795
SRR1144634	flowers PnWB infected	284.7585
SRR122257	hairy root CK	127.676
SRR122258	hairy root MeJA 250um CK	195.078
SRR122259	hairy root MeJA 250um 24h	112.554
SRR122256	hairy root RebH F CK	124.908
SRR122255	hairy root TDCi CK	146.885
SRR122260	hairy root TDCi MeJA 250um CK	212.271
SRR122261	hairy root TDCi MeJA 250um 24h	127.629
SRR1820161	Hairy roots CK BAI1 14	72.2321
SRR1820157	Hairy roots CK BAI1 18	70.6603
SRR1820149	Hairy roots CK BAI1 19	92.9548
SRR1820238	Hairy roots CK GUS 3	75.4464
SRR1820233	Hairy roots CK GUS 4	57.4216
SRR1820326	Hairy roots CK GUS 5	71.85565
SRR2098821	hairy roots OE AS CK rep1	485.029
SRR2099440	hairy roots OE AS CK rep2	220.539
SRR122252	immature leaf CK	115.647
SRR342023	leaf CK 1	67.522
SRR342022	leaf CK 2	104.7
SRR342019	leaf CK 3	60.3295
SRR342017	leaf CK 4	47.4494
SRR1271857	leaf CK 5	14.14935
SRR122251	mature leaf CK	190.655
SRR648705	root CK 1	161.9405
SRR1271858	root CK 2	267.768
SRR122254	root CK 3	88.3618
SRR648707	root MeJA 24h	197.6695
SRR648709	root MeJA 24h DSN normalized	146.152
SRR837772	seedling CK	251.3495
SRR122243	sterile seedlings AE CK 1	97.0754
SRR122245	sterile seedlings AE CK 2	30.6935
SRR122244	sterile seedlings AF MeJA 6um 12d	59.7635
SRR122253	stem CK	88.4533
SRR646572	shoots CK	290.2875
SRR647068	shoots MeJA 6h 1	191.1095
SRR646596	shoots MeJA 6h 2	128.3155
SRR646604	shoots MeJA 24h	605.3845
SRR924147	suspension cells EX ORCA2 CK	38.667
SRR924148	suspension cells EX ORCA3 CK	37.7387

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