CRO_T033378's detailed information
Annotation (DRYAD)
| Gene ID | Functional Annotation |
|---|---|
| CRO_T033378 | DNA-directed RNA polymerase II protein |
Blast top3 hits
| Species | Gene ID | E-value | Annotation |
|---|---|---|---|
| Arabidopsis thaliana | AT4G08540 | 1.00E-147 | DNA-directed RNA polymerase II protein |
| Arabidopsis thaliana | AT4G08540 | 1.00E-147 | DNA-directed RNA polymerase II protein |
| Arabidopsis thaliana | AT1G77890 | 6.00E-71 | DNA-directed RNA polymerase II protein |
Network
| Network Category | Global Network | Tissue Preferential Network | Treat Response Network |
|---|---|---|---|
| Coexpression Positive | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| Coexpression Negative | Top300 PCC Genelist | Top300 PCC Genelist | Top300 PCC Genelist |
| PPI Relationship | Null | ||
| miRNA-Target Relationship | Null | ||
Functional module
| Module ID | Function Annotation | Category |
|---|---|---|
| TissueCFM000482 | Meiosis - yeast positive regulation of autophagy DNA catabolic process, endonucleolytic RNA biosynthetic process hexose transmembrane transport DNA topological change glucose import DNA topoisomerase complex (ATP-hydrolyzing) chloroplast inner membrane chromosome DNA topoisomerase type II (ATP-hydrolyzing) activity DNA-directed RNA polymerase activity identical protein binding sugar:proton symporter activity glucose transmembrane transporter activity | tissue preferential network |
Location
| Gene | Assembly | Scaffold | Start | End | Strand |
|---|---|---|---|---|---|
| CRO_T033378 | scaffolds.min_1000bp | scaffold_3007468 | 11013 | 17964 | - |
Gene detail image
| Genome: |
| CRO_T033378 |
| CDS: |
| CRO_T033378 |
| Transcript: |
| CRO_T033378 |
| Protein: |
| CRO_T033378 |
Gene Ontology
| GO term | Description | Category |
|---|---|---|
| GO:0003899 | DNA-directed RNA polymerase activity | molecular_function |
| GO:0010508 | positive regulation of autophagy | biological_process |
| GO:0032774 | RNA biosynthetic process | biological_process |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | Pathway | Pathway ID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
PlantCyC
| Gene | Enzyme ID | Description | Pathway | Pathway id |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Pfam domain
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF10186.6 | Atg14 | 4 | 296 | 1.3e-55 |
Expression pattern
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| SRA Experiment | Description | FPKM | Color |
|---|---|---|---|
| ERR364390 | mixed tissue CK | 9.9278 | |
| SRR122236 | mixed tissue RA CK | 32.96055 | |
| SRR122237 | mixed tissue RB CK | 29.4925 | |
| SRR122250 | callus YE 0.3mg/ml CK | 23.4345 | |
| SRR122247 | callus YE 0.3mg/ml 6h | 14.4705 | |
| SRR122248 | callus YE 0.3mg/ml 12h | 19.4931 | |
| SRR122249 | callus YE 0.3mg/ml 24h | 19.756 | |
| SRR122242 | callus MeJA 100um 0h | 20.4592 | |
| SRR122246 | callus MeJA 100um 6h | 23.3639 | |
| SRR122240 | callus MeJA 100um 12h | 26.4548 | |
| SRR122241 | callus MeJA 100um 24h | 24.8538 | |
| SRR122239 | flower CK 1 | 15.7263 | |
| SRR1271859 | flower CK 2 | 21.74255 | |
| SRR1144633 | healthy flowers CK | 20.7552 | |
| SRR1144634 | flowers PnWB infected | 11.0515 | |
| SRR122257 | hairy root CK | 13.1672 | |
| SRR122258 | hairy root MeJA 250um CK | 8.55946 | |
| SRR122259 | hairy root MeJA 250um 24h | 15.2314 | |
| SRR122256 | hairy root RebH F CK | 10.4718 | |
| SRR122255 | hairy root TDCi CK | 12.1985 | |
| SRR122260 | hairy root TDCi MeJA 250um CK | 8.41742 | |
| SRR122261 | hairy root TDCi MeJA 250um 24h | 15.472 | |
| SRR1820161 | Hairy roots CK BAI1 14 | 16.1761 | |
| SRR1820157 | Hairy roots CK BAI1 18 | 16.5357 | |
| SRR1820149 | Hairy roots CK BAI1 19 | 17.9801 | |
| SRR1820238 | Hairy roots CK GUS 3 | 16.1626 | |
| SRR1820233 | Hairy roots CK GUS 4 | 14.4901 | |
| SRR1820326 | Hairy roots CK GUS 5 | 18.743 | |
| SRR2098821 | hairy roots OE AS CK rep1 | 12.8021 | |
| SRR2099440 | hairy roots OE AS CK rep2 | 9.66968 | |
| SRR122252 | immature leaf CK | 11.4934 | |
| SRR342023 | leaf CK 1 | 7.3236 | |
| SRR342022 | leaf CK 2 | 9.965955 | |
| SRR342019 | leaf CK 3 | 8.720405 | |
| SRR342017 | leaf CK 4 | 9.673705 | |
| SRR1271857 | leaf CK 5 | 29.21115 | |
| SRR122251 | mature leaf CK | 14.4335 | |
| SRR648705 | root CK 1 | 7.189915 | |
| SRR1271858 | root CK 2 | 13.83615 | |
| SRR122254 | root CK 3 | 11.1258 | |
| SRR648707 | root MeJA 24h | 7.63963 | |
| SRR648709 | root MeJA 24h DSN normalized | 6.61739 | |
| SRR837772 | seedling CK | 9.351775 | |
| SRR122243 | sterile seedlings AE CK 1 | 8.9563 | |
| SRR122245 | sterile seedlings AE CK 2 | 7.42491 | |
| SRR122244 | sterile seedlings AF MeJA 6um 12d | 10.5352 | |
| SRR122253 | stem CK | 12.2636 | |
| SRR646572 | shoots CK | 16.80525 | |
| SRR647068 | shoots MeJA 6h 1 | 14.1565 | |
| SRR646596 | shoots MeJA 6h 2 | 13.6272 | |
| SRR646604 | shoots MeJA 24h | 14.5257 | |
| SRR924147 | suspension cells EX ORCA2 CK | 8.04101 | |
| SRR924148 | suspension cells EX ORCA3 CK | 6.81593 |