cro-miR159a's details annotation
|
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb
|
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|
| DNA binding | 0.004076964 | GO:0003677 |
| cellular protein metabolic process | 0.004955377 | GO:0044267 |
| Transcription_related, Transcription factor: MYB | 0.000326768 | gene family |
miiRNA targets
| Gene ID | Expection | Align sequence(miRNA-target) | Annotation |
|---|
| CRO_T009355 | 1 | | | ncRNA: | 21 | AUCUCGAGGGAAGUUAGGUUU | 1 | | | | | *|||||||||||||||||||* | | | | targets: | 1961 | CAGAGCUCCCUUCAAUCCAAU | 1981 |
| myb domain protein |
| CRO_T011374 | 2.5 | | | ncRNA: | 21 | AUCUCGAGGGAAGUUAGGUUU | 1 | | | | | *|||*||||||||||*||||| | | | | targets: | 174 | GAGAACUCCCUUCAAACCAAA | 194 |
| Putative ribonuclease H protein At1g65750 |
| CRO_T014768 | 2.5 | | | ncRNA: | 21 | AUCUCGAGGGAAGUUAGGUUU | 1 | | | | | |=||||*||||||||*||||| | | | | targets: | 6098 | UGGAGCCCCCUUCAAACCAAA | 6118 |
| hypothetical protein |
| CRO_T018593 | 1.5 | | | ncRNA: | 21 | AUCUCGAGGGAAGUUAGGUUU | 1 | | | | | |=||||||||||||*|||||| | | | | targets: | 3519 | UGGAGCUCCCUUCACUCCAAA | 3539 |
| myb domain protein |
| CRO_T019091 | 2.5 | | | ncRNA: | 21 | AUCUCGAGGGAAGUUAGGUUU | 1 | | | | | ||||*||||||||*||||||| | | | | targets: | 3437 | UAGAACUCCCUUCCAUCCAAA | 3457 |
| Putative ribonuclease H protein At1g65750 |
| CRO_T023538 | 3 | | | ncRNA: | 21 | AUCUCGAGGGAAGUUAGGUUU | 1 | | | | | *|*|||*|||||||||||||* | | | | targets: | 712 | AAAAGCCCCCUUCAAUCCAAU | 732 |
| RING/U-box superfamily protein |
Expression profilings
