cro-novel-86's details annotation
Protein:
Yellow color--query protein
Green color--interaction proteins.
Interaction line:
Pink--proteins own interaction and positive co-expression relationship with target protein
Blue--proteins own interaction and negative co-expression relationship with target protein
Orange--proteins own interaction and protein-protein relationship with target protein
This network produced by cytoscapeweb

Module annotation (GSEA enrichment result)

Function AnnotationFDRGene Ontolog
chorismate synthase activity0.017483583GO:0004107
very long-chain fatty acid-CoA ligase activity0.017483583GO:0031957
asparaginase activity0.023303179GO:0004067
long-chain fatty acid-CoA ligase activity0.024455328GO:0004467
protein tyrosine kinase activity0.024455328GO:0004713
developmental process involved in reproduction0.027620978GO:0003006
organ senescence0.027620978GO:0010260
chorismate biosynthetic process0.027620978GO:0009423
detection of nutrient0.027620978GO:0009594
vegetative phase change0.027620978GO:0010050
cutin biosynthetic process0.032596716GO:0010143
primary root development0.032596716GO:0080022
aromatic amino acid family biosynthetic process0.032596716GO:0009073
long-chain fatty acid metabolic process0.032596716GO:0001676
sugar mediated signaling pathway0.032596716GO:0010182
lateral root formation0.032596716GO:0010311
formation of glycosidic bonds, GlycosylTransferases: GTnc0.041795566gene family
Monoterpenoid biosynthesis 0.017520547KEGG
Drug metabolism - cytochrome P450 0.017520547KEGG
Apelin signaling pathway 0.033491899KEGG

miiRNA targets

Gene IDExpectionAlign sequence(miRNA-target)Annotation
CRO_T0016201
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   *|*|||||*||||||||||||||| 
 targets:539AAUACAUCAUUUAGUACACUUUCU562
flavin-dependent monooxygenase
CRO_T0017661
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   *|**||||||*||||||||||||| 
 targets:6009AAUUCAUCUUCUAGUACACUUUCU6032
chorismate synthase, putative / 5-enolpyruvylshikimate-3-phosphate phospholyase, putative
CRO_T0074362.5
 ncRNA:24GUC-UGUAGAAAAUCAUGUGAAAGA1
   =||-|=||*|||||||=|||||||| 
 targets:1708UAGUAUAUGUUUUAGUGCACUUUCU1732
K-box region and MADS-box transcription factor family protein
CRO_T0152642.5
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   *||==|*||||||||||=|||||| 
 targets:9452AAGGUAACUUUUAGUACGCUUUCU9475
transducin family protein / WD-40 repeat family protein
CRO_T0167471
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   =|*|=|||||*||||||||||||| 
 targets:808UAUAUAUCUUCUAGUACACUUUCU831
NAD(P)-binding Rossmann-fold superfamily protein
CRO_T0179881
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   *|*|||||||*||||||||||||| 
 targets:1877AAUACAUCUUCUAGUACACUUUCU1900
N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
CRO_T0181541
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   |||=-|||*||||||||||||||| 
 targets:4587CAGG-AUCGUUUAGUACACUUUCU4609
dual specificity protein phosphatase-related
CRO_T0215191
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   =***||||*||||||||||||||| 
 targets:1659UUAUCAUCGUUUAGUACACUUUCU1682
SNF1 kinase homolog
CRO_T0216111
 ncRNA:24GUC-UGUAGAAAAUCAUGUGAAAGA1
   =||-|||||||*||||||||||||| 
 targets:11325UAGUACAUCUUCUAGUACACUUUCU11349
Protein kinase superfamily protein
CRO_T0226241.5
 ncRNA:24GUCUGUAGAAAAUCAUGUGAAAGA1
   *|*|=||||||||*|||||||||| 
 targets:2472AAUAUAUCUUUUAAUACACUUUCU2495
Glycosyltransferase family 61 protein
CRO_T0238661.5
 ncRNA:24GUC-UGUAGAAAAUCAUGUGAAAGA1
   *||-|||||||||||||||||||=| 
 targets:4022GAGUACAUCUUUUAGUACACUUUUU4046
long-chain acyl-CoA synthetase
CRO_T0284262
 ncRNA:24GUC-UGUAGAAAAUCAUGUGAAAGA1
   =||-|||||*|*||||||||||||| 
 targets:2937UAGUACAUCCUCUAGUACACUUUCU2961
Protein of Unknown Function (DUF239)
CRO_T0337791
 ncRNA:24GUC-UGUAGAAAAUCAUGUGAAAGA1
   =||-|||||||*||||||||||||| 
 targets:2865UAGCACAUCUUCUAGUACACUUUCU2889
UDP-Glycosyltransferase superfamily protein

Expression profilings


Show more details about the miRNA target expression profiles
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Maintained by Jiajie She & Hengyu Yan in Zhen Su's Lab | China Agricultural University
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