CFinderADM000321's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| sphingolipid delta-4 desaturase activity | 7.07E-07 | GO:0042284 |
| protein K48-linked deubiquitination | 3.71E-06 | GO:0071108 |
| positive regulation of intracellular protein transport | 3.71E-06 | GO:0090316 |
| positive regulation of vacuole organization | 3.71E-06 | GO:0044090 |
| protein K63-linked deubiquitination | 3.71E-06 | GO:0070536 |
| diacylglycerol biosynthesis (PUFA enrichment in oilseed) | 3.93E-06 | plantCyc |
| sphingolipid biosynthetic process | 9.89E-06 | GO:0030148 |
| vacuole organization | 1.98E-05 | GO:0007033 |
| intracellular transport | 1.98E-05 | GO:0046907 |
| Ubiquitin_Proteasome_system, DUB: JAMM | 2.47E-05 | ubs family |
| sphingolipid biosynthesis (plants) | 7.54E-05 | plantCyc |
| Sphingolipid metabolism | 0.000124097 | KEGG pathway |
| Endocytosis | 0.000184761 | KEGG pathway |
| intracellular | 0.015796479 | GO:0005622 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005533 | AT4G16144 (2.00E-174) | AMSH3|associated molecule with the SH3 domain of STAM 3 |
| CRO_T011653 | AT1G11740 (4.00E-10) | ankyrin repeat family protein |
| CRO_T014112 | AT3G23380 (1.00E-14) | RIC5|ROP-interactive CRIB motif-containing protein 5 |
| CRO_T027363 | AT4G04930 (7.00E-162) | DES-1-LIKE|fatty acid desaturase family protein |
| CRO_T030018 | AT3G15820 (2.00E-49) | ROD1|REDUCED OLEATE DESATURATION 1 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001098 | sphingolipid delta-4 desaturase activity sphingolipid biosynthetic process Phagosome Sphingolipid metabolism xylan biosynthesis sphingolipid biosynthesis (plants) formation of glycosidic bonds, GlycosylTransferases: GTnc microtubule-based process structural constituent of cytoskeleton cellulose synthase (UDP-forming) activity cellulose biosynthetic process GTPase activity microtubule cell wall organization GTP binding | details |
| CFinderADM001217 | pyridoxal 4-dehydrogenase activity L-galactose dehydrogenase activity protein K63-linked deubiquitination positive regulation of vacuole organization positive regulation of intracellular protein transport protein K48-linked deubiquitination L-ascorbic acid biosynthetic process hydrolysis of carbohydrate esters, Carbohydrate Esterases: CE8 intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM primary root development Protein_kinases_phosphatases, PPC:4.5.2: CDC2 Like Kinase Family L-ascorbate biosynthesis I (L-galactose pathway) Endocytosis Ascorbate and aldarate metabolism unidimensional cell growth vindoline and vinblastine biosynthesis plant-type cell wall organization cell redox homeostasis cell dioxygenase activity oxidation-reduction process | details |
| CFinderADM001454 | positive regulation of intracellular protein transport positive regulation of vacuole organization protein K48-linked deubiquitination protein K63-linked deubiquitination Adherens junction dTDP-glucose 4,6-dehydratase activity UDP-glucose 4,6-dehydratase activity UDP-L-rhamnose biosynthesis nucleotide-sugar metabolic process Protein_kinases_phosphatases, PPC:1.3.3: Leucine Rich Repeat Receptor Kinase I & Unknown Receptor Kinase I intracellular transport vacuole organization Ubiquitin_Proteasome_system, DUB: JAMM Endocytosis NF-kappa B signaling pathway Amino sugar and nucleotide sugar metabolism lipid metabolic process transport protein kinase activity intracellular hydrolase activity | details |
| CFinderADM001934 | positive regulation of vacuole organization protein K63-linked deubiquitination positive regulation of intracellular protein transport protein K48-linked deubiquitination Ubiquitin_Proteasome_system, DUB: JAMM intracellular transport vacuole organization flavin biosynthesis I (bacteria and plants) response to zinc ion regulation of sequestering of zinc ion zinc ion transmembrane transporter activity zinc II ion transmembrane transport Endocytosis cell cell redox homeostasis catalytic activity intracellular metabolic process integral component of membrane | details |
Expression profiles
 Show details about module gene expression profiling |