CFinderADM000422's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| long-day photoperiodism | 3.19E-05 | GO:0048571 |
| phospholipid dephosphorylation | 3.19E-05 | GO:0046839 |
| phospholipid metabolic process | 3.35E-05 | GO:0006644 |
| nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | 3.35E-05 | GO:0000184 |
| sugar mediated signaling pathway | 7.01E-05 | GO:0010182 |
| phosphatidate phosphatase activity | 8.28E-05 | GO:0008195 |
| response to wounding | 0.000127361 | GO:0009611 |
| DNA binding | 0.000230742 | GO:0003677 |
| salicylic acid mediated signaling pathway | 0.000250767 | GO:0009863 |
| phosphatidate metabolism, as a signaling molecule | 0.000264799 | plantCyc |
| jasmonic acid mediated signaling pathway | 0.000278914 | GO:0009867 |
| diacylglycerol and triacylglycerol biosynthesis | 0.000382295 | plantCyc |
| plasma membrane | 0.000677706 | GO:0005886 |
| cytoplasmic mRNA processing body | 0.000677706 | GO:0000932 |
| defense response to bacterium | 0.000761145 | GO:0042742 |
| helicase activity | 0.001089164 | GO:0004386 |
| Glycerolipid metabolism | 0.001639899 | KEGG pathway |
| signal transduction | 0.001992104 | GO:0007165 |
| Endocytosis | 0.002872241 | KEGG pathway |
| RNA transport | 0.00442987 | KEGG pathway |
| integral component of plasma membrane | 0.01336716 | GO:0005887 |
| plasmodesma | 0.018641392 | GO:0009506 |
| regulation of transcription, DNA-templated | 0.038085457 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T012288 | AT3G02400 (3.00E-09) | SMAD/FHA domain-containing protein |
| CRO_T025791 | AT5G47010 (0) | LBA1|LOW-LEVEL BETA-AMYLASE 1 |
| CRO_T026216 | AT1G15080 (4.00E-78) | ATLPP2|LIPID PHOSPHATE PHOSPHATASE 2; ATPAP2|PHOSPHATIDIC ACID PHOSPHATASE 2 |
| CRO_T031621 | AT4G35730 (3.00E-113) | Regulator of Vps4 activity in the MVB pathway protein |
| CRO_T033706 | AT5G62550 (7.00E-30) | unknown protein |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM001836 | MicroRNAs in cancer L-amino acid transmembrane transporter activity antiporter activity Protein_kinases_phosphatases, PPC:4.1.2: STE20-PAK Like Protein Kinase integral component of plasma membrane L-amino acid transport long-day photoperiodism nuclear-transcribed mRNA catabolic process, nonsense-mediated decay L-alpha-amino acid transmembrane transport sugar mediated signaling pathway COPII vesicle coat response to wounding cytoplasmic mRNA processing body salicylic acid mediated signaling pathway jasmonic acid mediated signaling pathway cytosol zinc ion binding ER to Golgi vesicle-mediated transport amino acid transmembrane transport defense response to bacterium helicase activity RNA transport intracellular protein transport kinase activity plasmodesma phosphorylation | details |
Expression profiles
 Show details about module gene expression profiling |