CFinderADM000469's detailed annotation
|
Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
| This network produced by cytoscapeweb |
Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| Cell cycle - Caulobacter | 8.62E-09 | KEGG pathway |
| serine-type endopeptidase activity | 2.60E-05 | GO:0004252 |
| proteolysis | 0.000727834 | GO:0006508 |
| chloroplast stroma | 0.001055128 | GO:0009570 |
| DNA-directed DNA polymerase activity | 0.001634552 | GO:0003887 |
| 3'-5' exonuclease activity | 0.001634552 | GO:0008408 |
| DNA biosynthetic process | 0.001684272 | GO:0071897 |
| DNA replication | 0.003700967 | KEGG pathway |
| nucleic acid phosphodiester bond hydrolysis | 0.004670586 | GO:0090305 |
| mitochondrion | 0.006516771 | GO:0005739 |
| cytoplasmic part | 0.014367331 | GO:0044444 |
| intracellular membrane-bounded organelle | 0.042543362 | GO:0043231 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T002560 | - | - |
| CRO_T003340 | - | - |
| CRO_T008086 | - | - |
| CRO_T010746 | - | - |
| CRO_T017846 | - | - |
| CRO_T020291 | ATCG00660 (4.00E-12) | RPL20|ribosomal protein L20 |
| CRO_T023437 | AT4G24730 (2.00E-26) | Calcineurin-like metallo-phosphoesterase superfamily protein |
| CRO_T023624 | AT3G26320 (2.00E-15) | CYP71B36|cytochrome P450, family 71, subfamily B, polypeptide 36 |
| CRO_T023699 | - | - |
| CRO_T029616 | - | - |
| CRO_T030744 | - | - |
| CRO_T032174 | - | - |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000071 | negative regulation of cell death calcium-dependent phospholipid binding γ-glutamyl cycle response to other organism killing of cells of other organism glutathione catabolic process 5-oxoprolinase (ATP-hydrolyzing) activity response to glucose regulation of cell proliferation HTLV-I infection glycolipid metabolic process intracellular membrane-bounded organelle endomembrane system indole-3-acetate biosynthesis I endosome membrane cytoplasmic part G-protein coupled receptor activity maturation of 5.8S rRNA glucosyltransferase activity Tryptophan metabolism formation of glycosidic bonds, GlycosylTransferases: GTnc D-arabinono-1,4-lactone oxidase activity flavin adenine dinucleotide binding regulation of signal transduction sugar mediated signaling pathway G-protein coupled receptor signaling pathway maturation of LSU-rRNA scopolin beta-glucosidase activity O-acyltransferase activity (-)-secologanin biosynthetic process MAP kinase activity N,N-dimethylaniline monooxygenase activity Protein_kinases_phosphatases, PPC:1.5.1: Wall Associated Kinase-like Kinase cell surface receptor signaling pathway glycosyl compound metabolic process galactosyltransferase activity | details |
| CFinderADM000102 | DNA-directed DNA polymerase activity 3'-5' exonuclease activity DNA biosynthetic process DNA replication nucleic acid phosphodiester bond hydrolysis nucleotide binding | details |
| CFinderADM000164 | anaerobic respiration rRNA binding cytoplasmic part endosome trans-Golgi network Ribosome translation intracellular membrane-bounded organelle structural constituent of ribosome | details |
| CFinderADM000304 | details | |
| CFinderADM000402 | mitochondrial small ribosomal subunit ribosomal small subunit assembly cytosolic small ribosomal subunit rRNA binding Ribosome translation structural constituent of ribosome | details |
| CFinderADM000415 | Transcription_related, Transcription factor: B3 | details |
| CFinderADM000483 | mitochondrion Oxidative phosphorylation proton-transporting ATP synthase complex, catalytic core F(1) proton-transporting ATPase activity, rotational mechanism proton-transporting ATP synthase activity, rotational mechanism ATP hydrolysis coupled proton transport ATP synthesis coupled proton transport NADH dehydrogenase (ubiquinone) activity | details |
| CFinderADM000689 | anaerobic respiration integral component of membrane endosome cytoplasmic part trans-Golgi network intracellular membrane-bounded organelle | details |
Expression profiles
 Show details about module gene expression profiling |