CFinderADM000560's detailed annotation
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Protein: Yellow color--query protein Green color--interaction proteins. Interaction line: Pink--proteins own interaction and positive co-expression relationship with target protein Blue--proteins own interaction and negative co-expression relationship with target protein Orange--proteins own interaction and protein-protein relationship with target protein |
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Module annotation (GSEA enrichment result)
| Function Annotation | FDR | Gene Ontolog |
|---|---|---|
| formation of glycosidic bonds, GlycosylTransferases: GTnc | 3.60E-05 | cazy family |
| trehalose biosynthetic process | 0.000179076 | GO:0005992 |
| CDP-diacylglycerol biosynthesis I | 0.000195788 | plantCyc |
| diacylglycerol and triacylglycerol biosynthesis | 0.000382295 | plantCyc |
| Glycerolipid metabolism | 0.000929648 | KEGG pathway |
| Transcription_related, Transcription factor: GRAS | 0.00118126 | TF family |
| transferase activity, transferring acyl groups | 0.002425585 | GO:0016746 |
| Starch and sucrose metabolism | 0.002816017 | KEGG pathway |
| catalytic activity | 0.012440932 | GO:0003824 |
| sequence-specific DNA binding | 0.012440932 | GO:0043565 |
| transcription factor activity, sequence-specific DNA binding | 0.013916333 | GO:0003700 |
| transcription, DNA-templated | 0.019492816 | GO:0006351 |
| metabolic process | 0.019492816 | GO:0008152 |
| regulation of transcription, DNA-templated | 0.040793505 | GO:0006355 |
Module member annotation
| Gene ID | Ortholog in Arabidopsis (Blast E-value) | Annotation in Arabidopsis |
|---|---|---|
| CRO_T005781 | AT1G02650 (6.00E-145) | Tetratricopeptide repeat (TPR)-like superfamily protein |
| CRO_T006506 | AT5G11500 (1.00E-100) | unknown protein |
| CRO_T022513 | AT1G06410 (0) | ATTPS7|trehalose-phosphatase/synthase 7; TPS7|TREHALOSE -6-PHOSPHATASE SYNTHASE S7 |
| CRO_T030602 | AT1G50600 (3.00E-111) | SCL5|scarecrow-like 5 |
| CRO_T030776 | AT3G18850 (4.00E-133) | LPAT5|lysophosphatidyl acyltransferase 5 |
Direct connection functional modules
| Module ID | Function Annotation | Overlap condition |
|---|---|---|
| CFinderADM000002 | Transcription_related, Transcription factor: M-type phosphatidylethanolamine binding L-alanine biosynthesis III nickel cation binding photoperiodism, flowering molybdenum cofactor biosynthesis transferase activity, transferring alkyl or aryl (other than methyl) groups regulation of flower development nitrogen compound metabolic process Circadian rhythm - plant Transcription_related, Transcription factor: G2-like transferase activity, transferring hexosyl groups Transcription_related, Transcription factor: MYB-related DNA-directed RNA polymerase activity Terpenoid backbone biosynthesis Transcription_related, Transcription factor: B3 multicellular organism development Transcription_related, Transcription factor: NAC binding Transcription_related, Transcription factor: FAR1 transcription, DNA-templated GTPase activity Purine metabolism | details |
| CFinderADM000253 | L-tyrosine:2-oxoglutarate aminotransferase activity ATP:ADP antiporter activity ADP transport ATP transport shoot system development L-phenylalanine biosynthesis III (cytosolic, plants) L-phenylalanine:2-oxoglutarate aminotransferase activity CDP-diacylglycerol biosynthesis I Calcium signaling pathway hydrolysis and/or rearrangement of glycosidic bonds, Glycoside Hydrolases: GHnc Transcription_related, Transcription factor: Trihelix seed development cellular amino acid metabolic process beta-galactosidase activity Transcription_related, Transcription factor: bZIP diacylglycerol and triacylglycerol biosynthesis root development biosynthetic process Glycerolipid metabolism transferase activity, transferring acyl groups Biosynthesis of amino acids mitochondrial inner membrane endoplasmic reticulum membrane pyridoxal phosphate binding Plant hormone signal transduction sequence-specific DNA binding | details |
| CFinderADM000466 | ATP:ADP antiporter activity ATP transport ADP transport shoot system development seed development CDP-diacylglycerol biosynthesis I Calcium signaling pathway diacylglycerol and triacylglycerol biosynthesis glutathione transferase activity root development transferase activity, transferring acyl groups Glutathione metabolism Glycerolipid metabolism mitochondrial inner membrane intracellular protein transport endoplasmic reticulum membrane endoplasmic reticulum Protein processing in endoplasmic reticulum metabolic process transmembrane transport translation structural constituent of ribosome integral component of membrane | details |
| CFinderADM000518 | dTTP biosynthetic process dUDP biosynthetic process dTDP biosynthetic process Protein_kinases_phosphatases, PPC:1.6.4: RKF3 Like Kinase L-tyrosine:2-oxoglutarate aminotransferase activity thymidylate kinase activity mature ribosome assembly formation of glycosidic bonds, GlycosylTransferases: GTnc uridylate kinase activity trehalose biosynthetic process L-isoleucine degradation I L-leucine degradation I L-phenylalanine biosynthesis III (cytosolic, plants) pyrimidine deoxyribonucleotide phosphorylation pyrimidine deoxyribonucleotides de novo biosynthesis II superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis (E. coli) xyloglucan biosynthesis L-phenylalanine:2-oxoglutarate aminotransferase activity 2-oxoisovalerate decarboxylation to isobutanoyl-CoA pyrimidine deoxyribonucleotides de novo biosynthesis I Propanoate metabolism cellular amino acid metabolic process CDP-diacylglycerol biosynthesis I L-valine degradation I translational elongation biosynthetic process diacylglycerol and triacylglycerol biosynthesis translation elongation factor activity Pyrimidine metabolism benzoate biosynthesis I (CoA-dependent, β-oxidative) transferase activity, transferring acyl groups other than amino-acyl groups transferase activity, transferring acyl groups Glycerolipid metabolism Biosynthesis of amino acids Ribosome biogenesis in eukaryotes intracellular protein transport GTPase activity pyridoxal phosphate binding Starch and sucrose metabolism | details |
| CFinderADM000596 | actin binding serine-type endopeptidase activity proteolysis transport | details |
| CFinderADM000824 | mitochondrial matrix Transcription_related, Transcription factor: bZIP CDP-diacylglycerol biosynthesis I plant sterol biosynthesis diacylglycerol and triacylglycerol biosynthesis iron-sulfur cluster assembly Steroid biosynthesis Glycerolipid metabolism translational initiation transferase activity, transferring acyl groups translation initiation factor activity Plant hormone signal transduction sequence-specific DNA binding transcription factor activity, sequence-specific DNA binding metabolic process regulation of transcription, DNA-templated | details |
| CFinderADM000831 | UMP kinase activity pyrimidine nucleotide biosynthetic process nucleotide phosphorylation UTP and CTP de novo biosynthesis CDP-diacylglycerol biosynthesis I Transcription_related, Transcription factor: Trihelix Glycerolipid metabolism transferase activity, transferring acyl groups diacylglycerol and triacylglycerol biosynthesis pyrimidine ribonucleotides interconversion Ubiquitin_Proteasome_system, E3 adaptor: F-box metabolic process | details |
Expression profiles
 Show details about module gene expression profiling |